Oncorhynchus mykiss (rainbow trout): 110486548
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Entry
110486548 CDS
T07259
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110486548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110486548
03009 Ribosome biogenesis [BR:
omy03009
]
110486548
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110486548
Spliceosome [BR:
omy03041
]
Complex A
U1 snRNP components
U1 related factors
110486548
Complex B
110486548
Ribosome biogenesis [BR:
omy03009
]
Eukaryotic type
Pre-60S particles
Helicases
110486548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110486548
NCBI-ProteinID:
XP_021413914
Ensembl:
ENSOMYG00000027075
UniProt:
A0A060WUC6
LinkDB
All DBs
Position
13:45621533..45627020
Genome browser
AA seq
616 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGGGKFGNPGDRLRKKHWNLDELSKFEKNF
YQEHPDVNRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEPT
PIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRE
LAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKTN
MRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYV
QINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEIT
RRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFDY
PNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADRG
GHSRGGRGGSGFRDDRRDRYSSGGRRDFSSFRDRENDRGFDSGPKKVFGTNSQSGGYGAS
GFDKSGNGFSGYGSNGQSNYGTSQAGAFPTQNFQAPQFSANQGGAQNGMSHQQFPFTQQQ
APQPMVPYPMPPQFPQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggtagagatagaggttatggcagtggaccacct
cgttttggaggcggcggaagaggaggtggtggtggtggggggaagttcggtaatcccggt
gatagactgcgcaagaagcattggaaccttgacgaactctctaaatttgaaaagaacttc
taccaagaacacccggatgttaatcggagatctccgcaagaggttgcacagtacagaagt
actaaagctgttactgtgaaggggagggactgccctaatccaattatgaagttccatgaa
gccagttttccaacatacgtgatggatgtcattaacaaagcaggctggtcagaaccaaca
ccgatccaagcacagggttggccactggcattgagtggcaaggacatggttggcattgca
cagacaggctctgggaaaactctctcttacttgttgcctgcaatcgtgcacattaaccac
cagcctttcctggaacgtggagatggccctatttgcttagtgcttgcccctacccgtgag
ctggctcagcaggtccagcaggtggcggcagagtatggcagagcttctcgcctgaagtct
gtctgcgtttatggtggtgcgcccaaagggccacagctccgtgacctggatagaggtgtg
gagatttgcattgccacacctggcaggcttattgacttcctggaggcgggaaagacgaac
atgcgcagatgcacttacctggtcctggatgaggctgaccgaatgctcgacatgggtttc
gaaccacaaatccgaaagattgtggaccaaatcagacctgaccgacagacgctgatgtgg
agtgctacctggcccaaagaggtgcgccagctggcagaggacttcctgaaggactacgtc
cagatcaatgtgggagctctgcagctgagtgccaaccacaacatcttacagatcgtggat
gtttgcaatgatggcgagaaggaagacaagctcctccgcctacttgaggagataatgagt
gagaaggagaacaagaccatcatctttacagagaccaagaggcgatgtgatgagatcact
aggaggatgaggagggatggttggccagcaatgggcatccatggagacaagagccagcag
gagagggactgggtgctcaatgagttcaagtttggaaaggcgccaattctcattgccaca
gacgtcgcctccaggggtctagatgttgaagatgtgaaatttgtcatcaactttgactac
cccaacaactctgaggactatattcaccgcatcggcagaactgcccggagccaaaagact
ggcacagcctacaccttcttcacccccaacaacatgaggcaggccagcgaccttgttgct
gtgctccgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacagagga
ggtcattcaaggggaggcagaggtggtagtggatttagggatgaccgccgggacaggtac
tcctccgggggcaggcgtgacttcagtagctttagggacagggaaaacgatagaggtttt
gacagtggaccaaagaaggtctttggcacaaattcacagagtggaggctatggggcaagt
ggctttgacaaaagcggcaatggttttagcggctacggcagcaacggccagtcaaactat
ggtaccagccaggccggggcgttcccaacgcagaacttccaggccccacagtttagtgcc
aaccaaggaggtgcacagaatggcatgagccatcaacagttccccttcacgcagcaacaa
gcaccacagcccatggtgccttacccaatgccccctcaattcccacagtaa
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