Oncorhynchus mykiss (rainbow trout): 110486688
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Entry
110486688 CDS
T07259
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110486688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110486688
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110486688
Spliceosome [BR:
omy03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110486688
Complex B
110486688
Complex C
U2 SnRNP specific factors
110486688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
110486688
NCBI-ProteinID:
XP_021414135
Ensembl:
ENSOMYG00000004937
LinkDB
All DBs
Position
13:complement(49515050..49522522)
Genome browser
AA seq
929 aa
AA seq
DB search
MNWSKGGPSGKRGFGFGGFSLGGGGGGGGKKEELHVPQKSHTSFGGAGTAGGYGKNQQLP
AFYKIGTKRANFDEENAYFEDDEEESSSTDLPYIPAENSPTRQQFRSGGGSDSEDDPLDA
FMAQVEDQAAKDMKKLEEKEKEKKVEKGIRDDIEEEDEQEAYFRYMAENPTAGLTAEDED
ENIDYDSDGNPIPPTTKKIIMPLPPMDHSEIDYPPFERNFYNEHEELLSLTGTEVFELRH
KLNLRVSGAAPPKLSTSFAHFGFDEQLMHIIRKSEYTQPTPIQCQGVPIALSGRDMIGIA
KTGSGKTAAFIWPMLVHIMDQKELETGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRS
VAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGF
EYQVRSIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVEI
MPSGVEKWGWLTRRLVEFTSSGSVLIFVTKKANCEELATNLTQEGHSLGLLHGDMDQSER
NKVIADFKKKSLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGV
AYTLLTSKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGG
LGYRERPGLGAESSERSGGAAMGNYEGYSKPTGAMGDRMSAMKSAFQSQYKNHFVAASGM
VPKLTTKSSSSSGWTSAGSLSSVPTGAPEGPDRPRGPPSLAMAPPAVLGMGTKMAGFTSA
GSLSSVSDSQATAPQGNAAPPSPREGPRDRHGDDRSRHGDGHYRDRRDRSERHSGGGERD
RYGERDRHADRDRYGDKDRHGSSGRHGDSRNGDGSRRDRERDDCRGDRESGDRAGSEGRG
DRAEGKGDKEEDSFAVPDPPKRKKSRWDN
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgaactggagcaagggtggcccaagtggtaagcgagggttcggttttggaggattttcc
cttggtggtggtggtggtggaggaggaaagaaagaagaacttcacgtgcctcagaaatcc
cacacgtccttcggaggcgcagggacagctggaggttatggcaagaaccagcaactccct
gccttctacaagataggaacaaaaagagcaaattttgatgaagagaatgcatattttgaa
gatgatgaagaggagtcaagcagcacagatttgccatatatcccagctgagaactccccc
acacggcaacaattccgttctggagggggctcagacagtgaggatgatcctctggatgcc
ttcatggcccaagtggaggaccaagcagctaaagacatgaagaaactggaggaaaaagag
aaggaaaagaaggttgaaaagggtatacgtgatgacattgaagaggaagatgaacaagaa
gcctacttccgctacatggcagagaatcccacagctgggctgaccgcagaggatgaggat
gagaacatagactatgacagtgatgggaatcccattccccccaccactaagaagatcatc
atgcccctgcccccgatggaccactctgagattgactacccaccttttgagaggaacttc
tacaacgagcatgaggagcttctcagcctgacaggcaccgaggtgtttgagctgagacac
aaactcaacctgcgggtgtctggtgccgcccctcctaaactctccaccagcttcgcccac
tttgggtttgacgagcagctgatgcacataatccgcaagtcggagtacactcagccaaca
cctattcagtgccagggagttcccattgccctgagtgggcgtgacatgattggcattgcg
aaaactggtagtggcaagactgcagccttcatctggcccatgctagttcacatcatggac
cagaaggaactggagactggagaggggcccatcgcagtcattgtgtgccccaccagggag
ctctgtcagcagatccatgcggagtgtaagcgttttgggaaagcctactccctgcgctcg
gtggcggtgtatggaggaggcagcatgtgggaacaggccaaggctcttcaggagggggca
gagattgttgtgtgcaccccgggtcgtctgattgaccatgtgaaaaagaaggccacctct
ctgcagagagtgacatacctggtgtttgatgaggcagatagaatgtttgatatgggcttt
gagtatcaagtgagatccattgccagccatgtccgacctgatcgacagactcttctgttc
agcgccaccttccgtaagaagattgagaggctggctagagatatcctggtggaccccatc
cgcgtggtgcagggagacatcggggaggccaatgaggatgtgacccaggtagtggagatc
atgcccagtggggtggagaagtggggctggctgacccgccgcctggtggagtttacctcc
tctggctctgtacttatcttcgtcaccaagaaggccaactgtgaagagctggccaccaac
ctgacccaggagggccacagcctgggcctgctgcacggagacatggaccagagtgagagg
aacaaggtcatcgctgacttcaagaagaagagtctgcccgtgctggtggccaccgacgtg
gcagcccgtggtctggatatcccttcaatacgcacagtagtgaactatgacgtggctcgg
gacatcgacacacacacacaccgaattggccgaacaggtcgtgctggagaaaagggtgtt
gcctacacccttctcaccagtaaagacacatcatttgcaggagaccttgtgcgtaacctg
gagggagccaatcaaagtgtctctaaggagctaatggacttggcaatgcagaatccctgg
ttcaggaaatcacgcttcaagggcggcaaagggaagaagctaaacattggaggaggtggt
ctgggctacagagagaggccaggattgggagctgaaagttctgagcgtagtggtggtgct
gccatgggtaactatgagggctacagcaagcctaccggagccatgggagaccgcatgtca
gcaatgaagtcagccttccagtctcagtataagaaccactttgtggcggcgtccggcatg
gttcctaaactcaccactaagtccagtagctcttcaggctggaccagcgctggaagtctg
agctccgtccccaccggggcccctgagggcccagatcggccccgtgggcccccctcctta
gccatggcccctccagcagtcctcggcatgggcaccaagatggcaggcttcaccagcgct
ggctccctgagctctgtgtcagacagccaggccactgctcctcaggggaatgccgcccca
ccctcacccagggaagggccccgtgacagacatggtgatgacaggagtcgccatggagat
ggccactaccgtgacaggagagacaggagcgagcggcacagtggcgggggagagcgggac
cgctacggggagcgggaccgccacgcagaccgcgacagatacggggacaaggatcgccat
ggcagcagcgggcgccatggcgatagtcgtaatggagacggaagtagaagggacagagag
cgagacgattgtagaggtgacagggagagtggagacagagcagggagtgaaggaaggggg
gacagagctgaggggaaaggagacaaagaggaagacagctttgcagtcccagatccacca
aaacgtaaaaagagtaggtgggacaactaa
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