Oncorhynchus mykiss (rainbow trout): 110486769
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Entry
110486769 CDS
T07259
Name
(RefSeq) general transcription factor IIF subunit 1 isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110486769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110486769
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
110486769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
110486769
NCBI-ProteinID:
XP_036797353
UniProt:
A0A8C7NNZ6
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Position
13:complement(52415319..52430034)
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AA seq
540 aa
AA seq
DB search
MASLGGSSSSSTEYIVRVPKNTSKKYSIMAFNSGDKVNCSSWTQARMERDMSNRRMYGVE
ETEEGAAGSEFGKKQREEARRKKFGIVTREFKVEDQPWILKVNGKAGKRFKGTKKGGITE
NASYYIFTQCPDGAFEAFPVNGWYNFVPQAKHRTLTAEEAEEEWGRRNKVVNHFSIMLQR
RLREQERGPDDDDEEGEKGGKKKKKKGGRGGDLRIHDLEDDLELSSDESDSSGGEDGDSK
PKKKEGDVKGKVKKKKKKKRGSDSEANEDSDDGDFEGLEVDYMSDESSSEEEVGEEKAKS
NKEAVPKGIDEASESEEESEEEKQNEEEGKEEEEEEEGKKTPVQTKKKRDSSGESDTSED
SDIDGEAASALFMVKKRTPPKRGGGRGSGGSSRTGSRPGTPSIDSASTSNTLRAAASKLE
QGKRQVVGGSSESPAAKRLKMESSSTAVTTQSPAPSGKSTPQPPSGKSTPSSSDVQLTEE
AVRRYLIRKPMTTKDLLKKFQTKRTGLSSEQTVNVLAQILKRLNPERKNVNDKMHFYLTE
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcattgggtggcagcagttcctcttctacagagtacatagtccgggtccccaag
aacaccagtaagaagtacagcatcatggcctttaactctggggacaaagtaaactgctcc
tcctggacccaggcgcgtatggagcgggacatgagtaacaggaggatgtatggtgtggag
gagactgaggagggggcggcaggcagtgagtttgggaagaagcagagggaggaggcacgc
aggaagaagtttggaatcgtcaccagggagttcaaggtggaggaccaaccctggatcctc
aaggtcaacggcaaggcagggaagaggttcaagggtacgaagaaagggggcataacggag
aatgcgtcctactacatctttacccagtgtcccgacggggcctttgaggccttccccgtc
aacggttggtacaacttcgtgccccaggccaaacaccgcacgctgaccgccgaggaggca
gaggaggagtggggcaggaggaacaaggtggtgaaccacttcagcatcatgctccagagg
cgcctgcgggagcaggagagagggccggacgatgacgacgaggagggcgagaaggggggg
aagaagaaaaagaagaagggaggaagaggaggggacctgcgcatccatgacctggaggat
gacctggagctgagcagtgacgagagcgacagcagtggaggagaagatggagacagcaag
cccaagaagaaagagggggatgtgaaggggaaggtgaagaagaagaagaagaagaagagg
ggcagtgacagcgaggcgaatgaggacagtgacgatggagactttgagggcctggaagtc
gactacatgtcagatgagagcagttcagaggaagaggtcggcgaagagaaggccaagtcc
aataaagaggccgttcccaaaggaatcgacgaggcatcggagagtgaggaagagagcgag
gaggagaaacagaacgaggaagaggggaaagaggaggaggaggaagaggaagggaagaag
accccagtccagacgaagaagaagagagacagcagcggtgagtcggacacttcggaggac
agcgacatcgatggagaggcagcctccgctctcttcatggtgaagaagcgtactcctcct
aagcgcggtggtgggcgtggctctggaggcagctccaggactggcagtcgccctggaaca
ccgtccatagactccgcctccacctccaacacactccgagccgccgctagcaaactggag
caaggtaagagacaggtggtgggtggtagctctgagtctccagctgccaagaggctgaag
atggagtccagcagtacggctgtcaccacccagagtcctgccccctcagggaagagcacg
ccacagcccccctcaggcaaatcaacccccagttccagtgacgttcagctgacggaggag
gcggtgcgtcgctacctgatccggaagcccatgaccaccaaggacctgctgaagaagttc
cagaccaagaggactggcctgagcagcgagcagacggtcaacgtcctggcccagatcctc
aaacgcctcaaccctgagaggaagaacgtcaacgacaagatgcacttctacctcacagag
taa
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