Oncorhynchus mykiss (rainbow trout): 110487142
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Entry
110487142 CDS
T07259
Name
(RefSeq) C-myc promoter-binding protein isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110487142
Membrane trafficking [BR:
omy04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
110487142
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
DUF2464
PPR_long
PPR
Motif
Other DBs
NCBI-GeneID:
110487142
NCBI-ProteinID:
XP_036837442
LinkDB
All DBs
Position
6:92440149..92587713
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AA seq
2033 aa
AA seq
DB search
MEDKGPRVADYFVLAGLTDSSTPLEQEIHFHDVCHKTAKPKPPITDVAVVMRSLGEEVPP
GYTCVESTPSGLSADLNNGSLMAPQIFLCYRRGRDKPPLTDLGVLYEWKERLKQGCHIIQ
TTPSGRPANISSTSSQRIYVTYRRATESQTYAALAVTDICVIIPGKGETPPHTFCKVDKN
LNSSMWGSSVYLCYKKSVAKPNTIAYKAGLFSRYPEEDYESFPLPESVPLFCLPMGATIE
AWPAQTKYPLPVFSTFVLTGSSGEKVYGAAIQFYEPYSQDCLTDQQRSQLGLPGLDHGPC
SPASSPATSPCTPAPGPRALHTNKCICLLSHWPFFDAFRKFLTFLYRYCISGPHTLPIEK
HISHFMHKVPFPSSQRPRILVQLSPHDSLMLSQPVSSPLPLSGGRFSILLQNLGPENAIT
LLVFAVTEHKILVHSLRPAVLTSVTEALVAMIFPFHWPCPYIPLCPLALAGVLSAPCPFI
VGVDSRYFDLYDPPLDVSCVDLDTNTISHNGDKRALTWKILPKKACKNLMNVLNNLYQQL
VDGQQRPDGLLELSMSDCTELACGKSLHSLEMEIQEAFLRFMAAILKGYRSYLRPITQAP
SEKTTDASSLFDLQGFLKSRDRSHQKFYSLMTKTQMFIRFIEECSFVSDKDASLAFFDDC
VDKIYSADKGGKVDSDKPDETRLIEIDESQRSEHTVFITPPELPHLPDGEEHPLCYSYAG
FPVLSLDLFDPMEGLRPPASRLAARQSCPTSPAPMFRRTKQEIKLSQKLAKKYSSIPQMW
SKCLLCHCYGLWFICLPSYVKVCHSKVRALRTAYDVLRKMQDKKLQPPDEVCYRVLMQLC
GQYGQPVLAVRVLFEMKKAGVQPNAITYGYYNKAVLESTWPSSTRGGYFMWMKLRNVVMG
VAQFRQALRKQQPPPTQSPLSDGSDLDAVSHGSLDSSADTNTAEQGPYAPDSIKVDPTDD
RRSTVSRGDWGGVGSDTRSGHSHWGGSDLHSPRHSGEQSDLGYNSLSKEEVRRGEPSPLD
RDSTQDKDNKKESDCSSLSESTAKSSGDCLPQQDFPEVNGPFKRHNSGIVRGNCSYADVA
CEPKRSTSTDHVAGLLLSSSLNEVGVVETNSLRRRHLSALEEGGVSGSSGGGGGGGHDWQ
GVRGCRLSGDNRVGSGSSGTPVLGLGLHQGETDPARIAENLGADTKILQGTSFSQTNRPR
SLVLGGSEGVGAAGGRTRRCRRRDSPEDGEERDWSDEDKNDKNNTDAIFDLEDLDLDGPT
TESVAKTSQSRKRTVERSASYGGVGVASASRGTVKRTGIETGFDPLSLLAAESKSQGDRE
YDLEVEMDGVATPTGRRQDHLAREIEMYMNHMGSPLNSRTPSMDLQDPSSPLFLHPPPPL
ITTPRRASLPHTSPLRTGGLPRSRTHNSPSPSQPARQRLWSSPPCPRSTPSPQPSPYRER
ERDRDLGLLSPSLSSSSFALEQLLTPTLDVFKSSVFSAGKGVAEKASRWYSRLATSYTVP
TKDGNCDRLSVSSLGMDPDCSSLLDVDEEGLGDPDGSITSPQRNGPGPRRSPRRSPSRRS
PLRSRLDSFTHRQTGFPPPDCSDLGSSRYTSNTSVFQNYAMELLISSCSRCKTCDGLVYD
EEIMAGWTADDSNLNTTCPFCGNPFLPFLNVEIRDLRGPGRFYLKSSPSADEAVSSSYSV
STGLDTGTSTLSTPCPTTVLSPLSPRITVEGCSGNNRLSSSRAQCIEIPTERRQGALSPG
SAMVRSVSAFDPMEEPTRLSHNVPTSGSLPSRLNEASDPLSVDMEWRLHHPEPITVPYLS
PLVLWKELESLLENEGDPVITVSAVVDHHPIIYWNLVWSFRRLDLPSNLPGLILTSEHCN
RGSTVPRHWMSEDSKHVLIQILWDNLKLHRDLIQPFYILWNTQRLNCALLLDSVGYPLCR
PVSEAERPFGEELLHSVVKSIQRNDVSRPMGQLLQLLGQSLGVKRQRSLYRDILFLCLVA
LGKDNIDIDAFDREYKMAYDHLSPNLVKLTHNCDRPPSAGVMECRKTFGEPYL
NT seq
6102 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaaggggcctcgtgtagcagactacttcgtgctggctggtctgaccgactcc
tccacgcctctggagcaggagatccacttccacgatgtctgccacaagacggccaaaccc
aagccgcccatcaccgacgtcgctgtggtgatgcgctcgctgggggaagaggtgcctcct
gggtacacgtgcgtggaatccacgccgtccggcctgtcagcggacctgaacaacggaagt
ctcatggcgccacagatcttcctgtgttacagacgaggacgagacaaaccaccactcact
gacctgggtgttctgtatgagtggaaggagcggttgaagcagggttgccacatcatccag
accacgccctccggacgccctgccaacataagctccacctcctcacagaggatctacgtg
acgtatcgccgcgccacggagagccagacctacgccgccctggccgtcacagacatctgt
gtcatcatccccggcaagggagagacgccaccacacaccttctgcaaggtggacaagaac
ctcaacagcagtatgtggggttcctctgtctatctgtgttacaagaagtctgtggccaaa
cccaacaccatagcctacaaggcaggtctgtttagcaggtatcctgaggaggactatgag
tctttccccctgcctgagtccgtgcctctgttctgtctgcccatgggggccaccatcgag
gcctggccggcccagaccaaataccccctgcctgtcttctccaccttcgtactgaccgga
tcctctggagagaaggtgtacggtgcagccatccagttctacgagccctactcccaggac
tgtctgaccgaccagcagcgctctcagttgggtctaccggggctggaccacgggccctgt
tccccagcctcatccccagccacctccccctgcaccccagctccgggccccagagcgcta
cacaccaacaagtgtatctgtttgctgtctcactggcccttcttcgacgccttccgcaag
ttcctcaccttcctctatcgatactgcatctctggacctcacaccctgcccatcgagaag
cacatctcccacttcatgcacaaggtccccttcccctcctctcagaggcccaggatactg
gtgcagctctctcctcacgacagcctgatgttgagccagcccgtgtcatcccctctacca
ctcagtggtggtcggttctccatactgctgcagaacctcggtccggagaatgctataacg
ctcctggtgtttgctgtgacagaacataagatcctggtccactctctacggcccgctgtt
ctgaccagtgtcactgaggctctggtggctatgatcttcccattccactggccgtgtcca
tacatccctctgtgcccgctggctctggcaggagtcctctccgccccctgccccttcatt
gtgggtgtcgactcacgctactttgacctttacgacccccctctggacgtcagctgtgtc
gacctcgacacgaacaccatctcccacaacggagataagagggccctgacctggaagatc
ctgccaaagaaagcctgtaaaaacctgatgaatgtgctgaacaatctctaccagcaactg
gtggacggtcagcagcgtcctgatggcctattggagctgagtatgagtgactgtacagag
ctggcctgtgggaagagcctccacagcctggagatggagatacaggaagccttcctcagg
ttcatggcggccatcttgaaaggctaccgctcatacctgagacccatcacccaggccccg
tctgagaagactactgacgcctcctctctctttgacctgcaagggttcctgaagagcaga
gaccggtcccaccagaagttctactccctgatgaccaagactcagatgttcatcagattc
atagaggagtgctccttcgtctcagacaaagacgccagcttggccttcttcgatgactgt
gtggacaagatctacagtgcagacaaaggaggcaaggtggacagcgataagccagatgag
accaggctgatagagattgacgaatcacagcgcagcgagcacacagtcttcatcacaccc
cctgaactaccccatctgcctgatggagaggagcacccactctgctacagctatgcaggt
ttcccggtgttgagtcttgatctgtttgaccccatggaaggcctccgaccccctgcctct
cggctggctgcccgacagagctgcccaactagccctgcacccatgttcagacgcaccaaa
caggagatcaagttgtctcagaagttagccaagaagtactcttccatccctcagatgtgg
tccaagtgtctgctgtgccactgctacggcctgtggttcatctgtctgccgtcctacgtc
aaggtgtgccactccaaggtgcgggcgctgcgcaccgcctacgacgtcctcaggaagatg
caggacaagaaactacagcctcccgacgaggtctgttacagggtcttgatgcagctgtgt
ggtcagtacggccagccagtcctggcggtcagagttctgtttgagatgaagaaggctgga
gtccaacccaacgccatcacctacggctactacaacaaggcggtgttagagtctacctgg
ccctccagtaccagaggaggttacttcatgtggatgaagctgaggaacgtggttatgggt
gtggctcagttcagacaggcgctacgcaaacagcagcctccacccactcagagccctctg
tcagatggcagcgacctggacgctgtgagtcacggcagcctggatagctctgccgacacg
aacacggccgagcagggcccctacgcccctgactccatcaaagtagaccccactgacgat
aggcgtagcacagtcagccgcggggactggggcggtgtggggtcggacacccggtcgggt
cactcacactgggggggttctgacctccactccccccgccactcaggtgagcagtcagac
ctggggtataactccctctctaaagaagaggtacgtagaggagagcccagccctctggac
agggacagcacccaggacaaggacaacaagaaggagagtgactgcagctccttgtcggag
agcactgctaagagcagtggagactgtctccctcaacaggacttcccagaggtcaacggt
ccattcaagcggcataattccggcatcgtccgcggcaactgttcctatgccgatgtagcc
tgtgagcccaagaggtcaaccagcacagaccatgtagcaggtctcctgttgagctcctct
ctgaatgaggtaggtgtggttgagaccaacagtctgaggaggagacatctcagtgccctt
gaggagggaggtgtcagtgggagtagtggaggaggaggaggaggaggccatgactggcag
ggtgtgcgagggtgcagactgagtggagacaacagggttggcagtggtagcagtggcact
ccagtgttgggtctgggactgcaccagggagagactgacccagccaggatagcagagaac
ctgggggcagacaccaagatcctccaggggaccagcttcagccagaccaacaggccgagg
tcgttagtcctgggagggtcagagggggttggagcagccgggggaagaaccaggcgctgc
agacgtagagacagccctgaagacggagaggagagggactggagcgacgaggacaagaat
gacaagaataatacagacgccatctttgatctggaggacctagatctggacggaccaacc
acagagagcgttgctaaaaccagccaatcacggaagaggacggtggaacgcagcgccagc
tatggcggtgtgggtgtggcctcagcctcgcggggcaccgttaaacgaacggggatcgag
acaggcttcgacccgctgtccctcctggcggccgagtccaagtcccagggagacagagag
tacgacctggaagtggagatggatggggtcgcgacccctacgggccggcgccaggaccac
ctggctagggagatagagatgtacatgaaccatatgggttctccgctgaacagccggaca
cccagtatggacctccaggacccctccagccccctgttcctccaccctcctcccccactt
atcaccacccctcgacgggccagtctcccccatacctcccctctcaggacaggaggatta
cctcgctccaggacccacaactccccctcgccctcccagcctgccagacagaggctctgg
tcctcacccccctgtccccgctccacccccagcccacagcccagcccctaccgggagagg
gagagagacagggacctgggtttgctgtccccgtctctgtcctcctcttccttcgccctg
gaacagctcctcacccccaccctggatgtgtttaagagcagcgtgttctcggcagggaaa
ggtgtggcagagaaggctagccggtggtactctcgcctggccacctcctacaccgtgccc
accaaggatggtaactgtgaccgtctgagtgtgtcctctctgggcatggaccctgactgc
tcctccctgttggatgtggatgaggagggcctgggggacccagacggctccatcacctcc
cctcagagaaatggccccgggccccgtaggagcccaaggagaagcccatccagacgcagt
cccctgaggagcagactggacagtttcacacacagacagacaggctttcctcccccagac
tgctctgatctgggctcgtctcgctacaccagcaataccagtgtcttccagaactacgcc
atggagctgttgatctccagctgttctcgctgtaagacgtgtgacggtctggtgtacgac
gaggagatcatggcaggatggacggctgacgactccaacctcaacaccacctgtcccttc
tgtgggaaccccttcctccccttccttaatgtagagatcagagacctgagaggacccggg
aggttctacctgaagagcagtccgtcagcggatgaggctgtgtcatcgtcctactctgtg
tccaccggtctggacaccgggacgtccactctgtccactccctgtcccactactgtccta
tctcctctctcacccaggatcactgtagagggctgctctggtaacaacaggctgtcgtcg
tccagggcccagtgtatagagatccctacagagcggcgtcagggggccctgtccccaggg
tcagctatggtgcggagtgtcagtgcctttgaccccatggaggaaccaactcgactcagc
cacaatgtacccacttcaggcagcctgcccagccgactcaacgaagccagcgaccccctg
agtgttgatatggagtggcgtctccaccacccagaaccaatcacagtaccctacctgagt
cccctggtgctgtggaaggagctggagtccctgctggagaacgagggagaccctgttatc
acagtgtcagccgtggtggaccaccatcctattatctactggaacctggtttggtccttc
agacgtctggacctgcccagcaacctgcctggactcatactgacctcagagcactgtaac
aggggatctacggtccctcgccactggatgtcagaggacagtaaacacgtgttgatccag
atcttatgggacaacctcaagctgcaccgggatctcatccagccgttctacatcctgtgg
aacacacagaggcttaattgtgctctgttgttagacagtgtgggctacccgttgtgtcgt
cctgtgagcgaggcggagcgtccgtttggggaggagctactccacagcgtggtcaagagc
atccagaggaacgacgtctctcggccaatgggacagctcctacagctgctagggcagagc
ctgggggtcaagaggcaaaggagtctgtacagagacatcctcttcctgtgtctggtggct
ctgggaaaggacaacattgacatcgatgcttttgaccgcgaatacaagatggcgtacgac
cacctcagccccaacctggtgaagctgacgcacaactgcgaccgtccgcccagcgctggg
gtcatggagtgtcgcaagaccttcggagagccctacctctga
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