Oncorhynchus mykiss (rainbow trout): 110487441
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Entry
110487441 CDS
T07259
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
omy03016
]
110487441 (trub1)
Enzymes [BR:
omy01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
110487441 (trub1)
Transfer RNA biogenesis [BR:
omy03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
110487441 (trub1)
Prokaryotic type
110487441 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
110487441
NCBI-ProteinID:
XP_036797782
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All DBs
Position
13:complement(63699247..63700715)
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AA seq
300 aa
AA seq
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MAGSVTGVAVPKHSLSKLQSLNGLFAIYKKEGPTSADVLNSLKETLLKEAGVKDPNPRKR
KKQALKMGHGGTLDSAASGVLVVGIGNGTKMLSTMLAGSKKYLAVGELGKATDTLDATGK
VVHEKLYDHITREAFEEKLKQFTGDIMQVPPLYSALKKDGKRLSVLLKQGHEVEAKPARP
VTVYNLSLQDFTPPLFTLDVECGGGFYIRSLVDDLGKALSSCAHVRKLIRTKQGQFTLDD
HTLQEEHWTLQHIVQSMQPCPGSEVTKEDGTKPSPNLGVKRTLNAQVKGDKNGKDEKGEL
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggctggttcagtaactggcgtagctgtgcctaaacattctttatcaaaactacaatct
ttaaatggactttttgccatttataaaaaggaaggacctacgtctgctgatgttttaaac
tcattaaaagagacactcctcaaagaggccggtgtgaaagatcctaatcccagaaaaagg
aagaagcaagctctgaaaatggggcatggcggaactctggacagcgcagcctctggtgtg
ctcgttgttgggattggaaatggaacaaagatgcttagtactatgcttgctggttcaaag
aaatacctggctgttggagagttggggaaagcaacagacacccttgacgccacaggcaag
gtggttcatgagaagctctatgatcacattaccagggaagcctttgaggagaagttgaag
cagttcactggggacatcatgcaggttcctccactgtactctgcactgaagaaggatggc
aagcgtctttctgtcctgctgaagcaaggccacgaggtggaagccaaacctgcacggccg
gtcacagtgtataacctgtcgctgcaggacttcaccccccccctcttcactcttgatgtt
gaatgcggtggtggattttatatcagaagcttggtggacgacctgggaaaagcgctctcg
tcgtgtgcccacgtgaggaagctgatccggaccaaacagggtcagtttacccttgacgac
cacacgctgcaggaggaacactggacactacaacacatcgttcagtccatgcagccctgt
cccgggtcagaggtcaccaaggaggatggcacaaaaccaagcccaaacctgggggttaaa
cggaccctgaatgcccaggtgaagggggataagaatggcaaagatgaaaagggggagtta
taa
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