Oncorhynchus mykiss (rainbow trout): 110487510
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Entry
110487510 CDS
T07259
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I-like
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04010
MAPK signaling pathway
omy04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
110487510
04020 Calcium signaling pathway
110487510
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
omy04040
]
110487510
Ion channels [BR:
omy04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
110487510
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
TMEM208_SND2
ETRAMP
ECSCR
DUF4834
Motif
Other DBs
NCBI-GeneID:
110487510
NCBI-ProteinID:
XP_036798481
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All DBs
Position
13:9909576..9975859
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AA seq
1151 aa
AA seq
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MTFRLPEELTNVLEICNIVFTSMFAMEMILKITASGCFNYLRNPYNVFDGVIVIISVCEI
IGQSDGGLSILRTFRLLRVLKLVRFMPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSIL
GMHIFGCKFSLKTEAGDTVPDRKNFDSLLWAIVTVFQILTQEDWNTVLYNGMAATSPLAA
LYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRSYSEDDSSPSNFDESEKLNDSLKLSD
PKICTLTPNGHLELTTLTPVMTPRGSYPTDRLTYALGSRKSSVMSLGKANLEQRRSFSLH
HGRSSLHHHWGRPPPPQSAWNRRSSWNSLGCPSRGLGGMGAGVVGGSLRVRSPHSHIHSL
YHSAEHEFLLSPALRLPPHHAPPLPLLSRRNAIRHRDRRALSLELPNMLQVPGGPPSHPN
PRMRSVSGGGSSGSGGMVVEHHDCNGKAPSPIGVMGPQTAQLLTEVFPQLNLAKDRSDLD
EEIDYSLCFRIQKMMEVYRPDWCEKREDWSVYLFSPQNKFRLLCQSIIAHKLFDYVVLSF
IFLNCITVALERPKILQSSLERLFLTVSNYVFTAIFVAEMTVKVVSKGLYLGEKAYLKSS
WNVLDGFLVFVSLIDIVVSMAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLIT
SLKPIGNIVLICCAFFIIFGILGVQLFKGKFYYCLGLEVKNITNKSDCLQANYRWVHHKY
NFDNLGQALMSLFVLASKDGWVNIMYHGLDAVGIDQQPSINNNPWMLLYFISFLLIVSFF
VLNMFVGVVVENFHKCRQNQEVEEAKRREEKRQRRMEKKRRKAQKLPYYTNYSHGRLMIH
TLCTSHYLDLFITFIICINVITMSLEHYSQPQSLETSLKYCNYFFTTTFVLESVLKLIGF
GFRRFFKDRWNQLDLSIVLLSVMGIILEEIDYNASLPINPTIIRIMRVLRIARVLKLLKM
ATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGELVCNADYPCEGMSRHATF
ENFGMAFLTLFQVSTGDNWNGIMKDTLRECPPGPSDYPCHAGLQFISPMYFVSFVLTAQF
VLINVVVAVLMKHLDDSNKEAQEDAEMDAEIELELAQGQLQLPTCCMGGLGTGLVVAGAS
GAPGDFTRFFQ
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcaggctgcctgaggaactaaccaacgtgttggagatctgtaacatagtgttc
actagtatgtttgccatggagatgatcctgaagataacagcgtccggatgtttcaactat
ctgagaaacccctacaatgtgttcgacggtgtcatcgtcattatcagtgtgtgtgagatc
atcggccagtctgacggaggtctgtccattttgaggaccttcagactccttcgtgtcctg
aagctagtcaggttcatgccagcgctgcgcagacagctcgtggtcctgatgaagactatg
gacaatgtggccaccttctgtatgctgttgatgctgttcatctttatattcagtatcttg
gggatgcatatctttggctgcaagttcagcctgaagacagaggcaggagacactgttcca
gacaggaagaactttgactctctactctgggccatcgtcactgtgtttcagatcctaacc
caggaagactggaacacggtgctgtataatggaatggctgccacctctcctctagctgct
ctgtacttcgtagctcttatgacgtttgggaactacgtcctcttcaacctgctggtggcc
atcttggtagagggatttcaggctgagggagatgctaatcgctcctattcagaggatgac
agttccccctctaactttgacgagagtgagaagcttaatgattctctcaaactgtctgat
cctaagatctgcactttgacccctaacgggcacctggagttgaccacgttgaccccggtg
atgacccccagggggtcgtaccccactgacaggctgacctatgccctggggtcacggaag
agcagcgttatgagtctgggcaaggccaacctggagcagaggagatcattctctctgcac
cacggccgcagttccctgcaccaccattggggtcgccctccccctcctcagagtgcatgg
aaccgcaggtccagctggaacagcctgggttgtccctcccgggggctaggggggatggga
gcaggtgtggtgggaggaagcctccgtgtccgaagcccccactcccacatccactccctt
taccactcagccgaacatgagttcctcctctcccccgctctccgcctcccccctcaccac
gctccccctctccccctcctctcccgacgcaatgccatccggcaccgggaccgccgcgct
ctctccctggagctgccaaacatgctccaggtccccgggggacctccgtctcaccccaac
cccaggatgaggagtgtttctgggggagggagcagcggcagtgggggtatggtggtggag
caccatgattgtaatggaaaggctcctagtcctattggtgttatgggtccccagactgcc
caactcctaacggaggtcttccctcagctgaacctcgccaaggacagatcggacctggat
gaggagatagactatagtctgtgtttccgtatccagaagatgatggaggtgtacaggcct
gactggtgtgagaaaagagaggactggtctgtctacctcttctcaccacagaacaagttc
agactgctatgtcagtccattatagcccacaagctctttgactacgtggttttatccttc
atctttctcaactgtatcactgtagctctggagagacccaagatactgcagagcagcttg
gaaagacttttcctcacagtctccaactacgtcttcacagccatatttgtggctgagatg
accgtcaaggtggtctctaagggtctgtacctgggtgagaaggcctatctgaaaagcagc
tggaacgttctggatggtttcctggtcttcgtgtcgttgattgacattgttgtgtccatg
gcgggcggggctaagattctgggggtgctgagagtgctcaggctgctcaggacactacgc
cctctcagggtgatcagtagagctccaggcctgaagctagtggtagagactctcatcacg
tctctgaagcctataggaaacatcgtcctcatctgctgcgctttctttatcatcttcggc
atcctcggtgtgcagctgttcaaggggaagttttactactgcctgggtctagaggtgaag
aacatcaccaacaagtctgactgtctccaggctaactacagatgggttcaccacaaatac
aactttgataacctgggacaggctctgatgtctctgtttgtgctggcatctaaagacggc
tgggtcaacatcatgtaccatggtctggatgctgtgggcatagaccaacagccgtctatt
aacaacaatccgtggatgctcctgtacttcatttccttcctcctcatcgtcagtttcttc
gttctcaacatgttcgtgggcgtggtggtggagaacttccacaagtgcagacagaaccag
gaagtggaggaggccaaaaggagggaggagaaacgacagagacgcatggagaagaagagg
aggaaggcccagaagctaccctactataccaactatagtcatggtcgtctgatgatccac
actctgtgtaccagccactacctggacctcttcatcaccttcatcatctgtatcaatgtc
attactatgtccctggaacactacagccaaccacagtcattggagacgagtctgaagtat
tgtaactatttcttcaccacaacctttgtgttggaatctgtcctcaagctcatcggcttc
gggttccgacgcttcttcaaggacaggtggaaccagctggacctgtccatagtgttgttg
tcagtgatgggcatcattctggaggagattgactacaatgcttctctacccatcaacccg
accatcatcagaatcatgagggtgctgcggatagcacgagttctcaagctattgaagatg
gctacaggaatgagagctcttctagatacagtggttcaggctctacctcaggtggggaac
ctgggcctgctgtttatgttgctgttcttcatctacgctgctctgggggtggaactgttt
ggagagctggtgtgtaatgctgactacccgtgtgagggcatgagtcggcacgccaccttc
gagaactttggtatggcctttctcaccctcttccaggtctccaccggagacaactggaac
ggcatcatgaaggacaccctgcgtgagtgccctccaggacccagtgactacccgtgccac
gctggactccagttcatctctcccatgtactttgtctccttcgtcctcaccgcccagttc
gtactcatcaacgtggtggtggctgtgctcatgaagcacctggacgactcaaacaaagag
gcccaggaggatgctgagatggatgcagagattgagctggagctagcccagggacaactc
caactacccacctgctgcatgggggggctgggcactgggctggtcgtggctggggcctct
ggagcgcctggtgattttactagattttttcagtga
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