KEGG   Oncorhynchus mykiss (rainbow trout): 110487803
Entry
110487803         CDS       T07259                                 
Symbol
seh1l
Name
(RefSeq) nucleoporin SEH1
  KO
K14299  nucleoporin SEH1
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013  Nucleocytoplasmic transport
omy04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    110487803 (seh1l)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    110487803 (seh1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:omy03019]
    110487803 (seh1l)
   04131 Membrane trafficking [BR:omy04131]
    110487803 (seh1l)
Messenger RNA biogenesis [BR:omy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     110487803 (seh1l)
Membrane trafficking [BR:omy04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    110487803 (seh1l)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_WDR3_2nd WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd EIF3I Beta-prop_EIPR1 WDR55 Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR35_TULP_N Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_C Beta-prop_IFT140_1st
Other DBs
NCBI-GeneID: 110487803
NCBI-ProteinID: XP_021415390
Ensembl: ENSOMYG00000032961
UniProt: A0A8C7ST34
LinkDB
Position
32:565124..587159
AA seq 363 aa
MFVARSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVK
FAPKHMGLMLTTCSADGVMRVYEAPDVMNLSQWSLQQEISSKLSCSCISWSPSSSRAHAP
MIAVGSDDSNTAYSGKVHIYEYIENTRKYAKAENLMTVTDPVHDIAFAPNLGRSFHVLAI
ATKDVRIFKLIPLRKESAAGSSGPTKLQVQILAQFDNHNSQVWRVSWNISSTLLASSGDD
GCVRLWKANYMDNWKCTAILRGDGSPVTGSSSQAAVPSTAGGPQHVLLQASSAGRKKAQL
IPG
NT seq 1092 nt   +upstreamnt  +downstreamnt
atgtttgtcgctcgaagtattgcagcggaccacaaggatcttattcatgatgtttcatat
gatttccatggccggagaatggcaacttgctctagtgaccaaagtgtcaaggtgtgggac
aagagtgacaacggagagtggaactgcactgccagctggaagacccatagtggatcagtg
tggagggtgacctgggcccatccagagtttggtcaggtgctggcctcctgctccttcgac
cggaccgctgctgtgtgggaggagatcgttggggagtccaatgacaaacagcgaggactc
agtcactggatcaagaggaccactctggtggacagcagaacgtcggtgactgacgtgaag
tttgctcctaaacacatgggtctgatgctgaccacgtgctcagcagatggggttatgagg
gtctacgaggctccagacgtaatgaacctcagccagtggtccctgcagcaggagatctcc
tctaaactcagctgctcctgtatctcctggagcccctccagctcccgtgcccacgccccc
atgatagcagtgggctctgatgacagcaacacagcatacagcgggaaagttcacatctat
gaatacattgaaaacacaaggaagtatgctaaggcagaaaatctgatgacggtgacagat
ccagtccatgacattgcctttgctcccaacttgggacgctcttttcacgtgctcgccatc
gccaccaaagacgtacgcatcttcaagctgataccactgaggaaagagtctgcagcgggg
tcgtctggtcccactaagctgcaggttcagatcctggcccagtttgacaaccacaactcc
caggtgtggagagtctcctggaacatcagcagcaccctgcttgcctcctcaggggatgat
ggctgtgtccggctctggaaagccaactacatggataactggaagtgtacagccatcctg
agaggagatggtagcccagtgacgggctcttccagtcaggctgcagtccccagcacagca
gggggaccacaacatgtcctgctgcaagcgtcctccgctggaagaaagaaagctcagctg
atacctggctaa

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