KEGG   Oncorhynchus mykiss (rainbow trout): 110487890
Entry
110487890         CDS       T07259                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110487890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:omy03041]
    110487890
Spliceosome [BR:omy03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    110487890
 Complex C
   U5 SnRNP specific factors
    110487890
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 WD40 Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 Beta-prop_WDR3_2nd EIF3I Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML WDR90_beta-prop_4th NBCH_WD40 Beta-prop_WDR41 Beta-prop_SPT8 Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR75_2nd Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_ACSF4 Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_IFT140_2nd WD40_like
Other DBs
NCBI-GeneID: 110487890
NCBI-ProteinID: XP_021415483
Ensembl: ENSOMYG00000005806
UniProt: A0A060YKD5
LinkDB
Position
32:complement(9959377..9966799)
AA seq 348 aa
MIEPKKRPGDMAVVPAGGVKRPRAELIAAAQSQQLVAMGPPRSSSLQAPIMLMCGHEGEV
YCCKFHPNGATLASSGYDRLILMWNVYGDCDNFATLKGHSGAVMELHYNTDGSLLFSAST
DKTVGVWDSETGERIKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKGAVHT
FQNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKMIYGMHGHGDSLTGLCLSSEGSY
LLSNSMDNTVRIWDVRPFAPKERCVKIFQGNIHNFEKNLLRCSWSADGSKIAAGSADRFV
YVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGASDKRLYMGEIQ
NT seq 1047 nt   +upstreamnt  +downstreamnt
atgattgagccaaagaagagaccgggggacatggcggtggttcctgcgggtggagtcaag
aggcccagggccgagctgatcgctgcggcacagtcgcaacaactcgtggccatgggccct
ccccgcagctccagcctgcaggctcccatcatgttgatgtgtggccatgagggagaggtc
tactgctgcaagttccatcctaacggggccacactggcctcctctggctatgacaggctc
atcttgatgtggaatgtgtacggggactgtgataactttgccaccctgaagggacacagt
ggtgctgtgatggagcttcactacaacacagacggcagcctgctgttcagtgccagcaca
gacaagactgtgggagtgtgggacagtgagacgggtgagaggatcaagcgtctgaaaggc
cacacctccttcgttaactcctgctaccctgctcgccgcgggcctcagctcgtctgtacc
ggcagcgacgacggaaccgtcaagctgtgggacatccgtaagaagggggcggtccatacg
ttccagaacacctaccaggtgttggccgtcacattcaacgacaccagcgaccagatcctg
tctggaggcatcgacaacgacatcaaggtgtgggacctgaggcagaataagatgatctat
ggtatgcatggtcatggggattctctgactggcctctgtctgagctcagagggatcctac
ctcctctccaactccatggacaacacagtacgtatttgggacgtccgtccgttcgctccc
aaggagaggtgtgtgaagatattccaggggaacattcacaactttgagaagaaccttctg
aggtgttcctggtctgctgacggcagcaagattgcagcaggctcagctgacaggtttgtg
tatgtgtgggacaccacctctcgtaggatcctgtacaagctgccagggcacgctgggtca
gtcaacgaggttgccttccatccagaggagcctattgtcctttctggcgccagtgacaag
agactctacatgggagagattcagtag

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