Oncorhynchus mykiss (rainbow trout): 110488195
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Entry
110488195 CDS
T07259
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
110488195
NCBI-ProteinID:
XP_036826826
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Position
32:27203437..27276446
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AA seq
1624 aa
AA seq
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MELRLGCRASLVLVILVLTLSGLKVDAQSRAGCKNVHYDLVFILDTSSSVGKENFEKIRQ
WVSNLVESFDVGPDKTRVAVVRYSDRPTTEFNLGRYSTMDEVKRAARNIRYLGGNTMTGD
AISYTTTNIFTERAGARPAARGIQKVAILLTDGRSQDYVLEPSKAAAKAGVRMFAVGIGE
ALKVELEEIAAEPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPNMKVQPDRFKPNSTS
YGLEEVPGFDLMEYFKVENILGPRFDEGQSSYVRLGTMPIVQQTEDVFPQGLPDEYAFVT
TFKFRKTSRREDWYLWQIFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNEEVD
NLFDRNWHKIALSVEAKAVSLYLDCKLIQTLPIGDREDIDIHGKTVIGKRLYDSVPIDFD
LQRMIIYCDSKHAELETCCDLPTGPCPKKVVTEVPPIEIPTPTPAREEQQRGPQAVNCSC
PAGERGEIGVPGVAGPKGEKGDTGALGAAGPSGLKGSKGETGKVISVKGDRGEKGDPGRR
GTSGDEGSKGEKGTSGAAGLAGKDGSKGERGESGLAGDQGLPGPLGPKGIEGDSGLPGSS
GPKGVGGEKGLKGDKGSGGLRGAKGIDGFPGKPGVPGKDGLGGLTGAPGAAGVKGEKGEM
GSAGMPGDMVQSEGLKGVDGPPGPRGPPGPDGPPGPPGAPGQLGLPGEPGEFGQRGKKGE
SGLPGVDGLPGPPGPQGPPGGQGNPGQTGPPGLPGEIGFSGKLGEPGKAGLPGNDGLDGV
PGNDGDKGPRGESGLDGFPGKPGPKGEEGTPGPRGPGGESGPVGLTGQPGVVGPRGEKGG
QGDRGQDGSFGPKGDKGDKGDTGPKGTPGIPGNVANVIPEPGEPGNPGARGEKGEQGNPG
EIGQRGLPGEPGFKGLAGAQGPKGDIGPKGETGRQGDPGPPGLQGTQGTRGLPGNVGIPG
TLGPPGIAGQRGERGDLGKEGRAGPPGPPGDAGIQGPPGLPGKGKDGQNGDPGQRGIEGP
PGQKGQPGSQGLQGVPGDRGPPGEGKVGPPGPSGPNGAVGSPGMRGLPGVAGTQGPAGHH
GLPGRPGEKGSPGEPGAAADLSDLNLKDVCSDCPAGPLGQPGLPGTPGDKGPAGPPGKNG
QDGYQGQAGPTGPTGPPGANGEKGVKGDGGPQGGPGDKGETGHTGPPGHPGAAGIMGNPG
NDGQPGPIGPPGAPGEKGKEGMKGIQGPPGLPGLMGQMGKIGKDGRPGEQGEPGKQGDTG
PPGQPGLRGMPGFKGHRGEPGQPGSKGEDGKEGRNGPEGKPGQDGNSGPPGPEGLAGRRG
ENGKPGEPGPSGKPGAPGTPGQAGAKGDPGNPGLPGFSGPKGPSGPAGPVGPEGKQGMSG
RAGERGVKGERGDSGGKGDKGPVGDPGMPGNQGLPGRKGHTGMMGMSGPPGEVGLTGPQG
TPGNPGQPGPRGESPSLETMRRLIQEELAKALDAKMAYLMAQIQPAHVKSTAGRPGPPGP
SGKEGSDGRPGPPGEPGMPGQNGGDGMRGPMGPKGERGSRGDKGENGVGQRGETGPSGPI
GPAGMPGYGKDGQPGAAGAQGEPGNPGPHGQAGPSGPPGQCDPSQCAYYASLGARPHTKN
VKGN
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcgactgggatgcagggcttccctggtcctggtcatactggtcctgacactc
tcaggactgaaggttgatgctcagagcagggcaggctgtaagaacgtgcactatgacctg
gtgttcatcctggacacgtcgtccagtgtggggaaggagaactttgagaagatccgccag
tgggtctccaacctggtggagtcgttcgacgtgggcccggacaagacgcgtgtggccgtg
gtacgctacagcgaccggcctaccacagagttcaacctgggacggtacagcaccatggac
gaggtgaagagggccgccaggaacatccgctacctgggagggaacaccatgaccggggac
gccataagctacaccaccaccaacatcttcactgagcgggccggggccaggcctgccgcc
aggggcatccagaaggtggctatcctcctgacggacgggaggagccaggattacgtgttg
gagccttccaaggcggcggcgaaggccggggtgaggatgttcgcagtgggcatcggggag
gctctgaaggtggaacttgaagagatcgctgcggaacctaagaacgctcacgtgttccat
gtgacagactttaacgccatcgacaagatcagagggcggctgaggagacggctctgtgag
aacgtgctgtgccccaatatgaaggtccaaccagaccgcttcaaacccaacagtaccagt
tatggattggaggaagttccagggttcgacctgatggaatacttcaaagtggaaaacata
ctgggaccaaggtttgatgagggccagagctcctatgttcgactagggaccatgcctatt
gtacaacagacagaagatgtgttccctcaaggtctgccagatgaatatgcttttgtgacg
actttcaagttcaggaagacctcgagacgagaggactggtacctctggcagatctttgac
aagtatggaattccacaggtgtctatccgtctggacggtgagaacaaggcagtggaatac
aatgcagtggggctgaccaaagatgcagtgagagctgtgttcaagaacgaagaggtggac
aacctgttcgacaggaactggcacaagatcgccctgagcgtcgaggccaaggctgtgtct
ctctacctggactgtaaactcattcagaccctgcccatcggggacagggaggacattgat
atccacgggaagactgtgatcgggaagaggctgtacgacagcgtgcccattgattttgac
cttcagagaatgatcatctactgtgactccaaacacgctgagctggagacctgctgtgat
ctgcccaccgggccgtgccccaagaaggtggtgacagaggtccctcccatagagattccc
acccccacccctgcaagggaggagcagcagagaggaccccaggcggtcaactgttcatgt
cccgctggagagaggggagagatcggtgtacctggcgttgccgggcccaagggtgaaaag
ggtgatactggtgctctgggagcggctggaccttctggcctcaagggatccaaaggagaa
actggcaaagtaatatctgtcaagggagacagaggtgagaagggtgatcccgggagacgg
gggacatccggcgatgaaggatccaaaggggagaagggaaccagtggagcggcaggtctt
gctgggaaagatggatctaaaggagaaagaggtgaatctgggctggcaggcgatcaggga
ttacctggacctctgggaccaaagggaattgaaggagactcgggacttcctggttcatct
ggacccaaaggtgtcggtggtgaaaaaggtttgaaaggagataaaggatcaggaggatta
cggggtgccaaaggtattgacggattccctggaaaacctggtgttcctggaaaagatggt
ttgggaggactgactggtgcacctggagccgctggagtgaaaggggaaaagggagagatg
ggctctgctggaatgcctggggatatggttcaaagcgagggcttgaaaggagtggatgga
cctccaggacctcgtggccctccagggcctgacggccccccaggaccccctggtgcacct
ggtcaacttggtttacctggcgaacctggagagtttggccaaaggggcaagaaaggtgaa
agtggattacctggtgtcgatgggctacccggacctcctggtccccaggggcctcctgga
gggcaaggaaaccctggacaaactggacctcctggtctacctggtgagattggattttca
gggaaactaggagagcctggcaaagctggtttacctggaaacgatgggctggacggagtt
ccaggaaatgacggagacaaggggcctagaggagagtctggattggatggcttccctggt
aaacctggtcctaagggtgaagaaggaacacctgggccaagaggacctggaggagagagt
ggaccagttggtttaactggacaaccaggggtcgttggaccaagaggggagaaaggagga
cagggtgacaggggacaagatggctctttcgggccaaagggtgacaaaggtgacaagggt
gacacaggacccaagggaactccaggaataccaggaaatgtggccaatgttatccctgag
cctggtgagcctggaaatcctggagcgagaggagaaaagggagagcaggggaatccagga
gagattggtcaacgaggactgcctggtgaaccaggctttaaaggactggctggagcacag
ggccctaaaggagacatcggccctaaaggagagactgggagacaaggagaccctggtcct
ccaggattgcagggtacgcagggcacccgtggattgcctggcaatgtgggcatccctgga
acccttggaccacctggaatagctggacagagaggagagaggggagatttggggaaggag
ggtcgtgctggccccccaggtccccctggagatgcaggcatacaaggaccccctggcctg
ccagggaagggcaaagacggacagaacggtgaccctgggcagcggggaattgaaggacct
cccggacagaagggccaacccggatcccagggacttcagggggttccaggggacaggggt
ccaccaggagaaggcaaagtcggacccccgggaccttcagggcccaatggtgcagttgga
tcaccgggcatgagaggtctgccaggcgtcgcaggtacacagggacctgcaggacaccat
ggtttaccaggacgaccaggagagaagggatccccaggagagccaggagcagcagcagac
ttgtcagatttgaatctgaaggacgtgtgttcagactgcccggccggacccctgggacag
cctggtctcccagggacaccaggagacaagggacctgccggacctccagggaagaacgga
caggacgggtaccaaggccaagcaggcccgaccggacccactggaccccctggtgccaac
ggagagaagggtgtgaaaggtgatggaggaccccaaggaggacctggagacaaaggagaa
acgggtcacaccggaccccctggccaccccggtgctgctggcatcatggggaatcctggt
aacgacggtcaacccggccccatcggtcccccaggagcccctggagaaaaaggaaaggag
gggatgaagggaatccaggggccaccaggtctaccaggcttaatgggtcaaatgggtaaa
attggcaaagatggccgaccaggagaacaaggagaacctggtaaacaaggagatacagga
ccaccaggacaaccaggtctcaggggaatgcctggcttcaagggtcacagaggagagcct
ggacaaccaggttcaaagggtgaagatggaaaggaaggacgtaacggaccggagggtaaa
cctggccaagacggtaatagtggacctcctgggccagaaggcctggctggccggagaggg
gagaatggtaaacctggtgaaccaggaccttcaggaaagccaggagcccctggtactcca
ggtcaggctggagccaagggagaccctgggaacccaggattaccaggctttagtggtccc
aagggaccgtcgggtcctgctggtccggtcggcccagaggggaaacagggtatgtctggc
agagcaggagaacgtggagtcaaaggagagaggggcgactcaggtgggaagggagataag
ggacctgttggagatccaggtatgcctggtaaccaggggctcccaggtcgtaagggccac
acagggatgatgggtatgtccgggcccccaggagaggtgggtcttacagggcctcaggga
acacctggaaaccccggacaaccaggaccacggggagagtcaccatcactggaaacaatg
agaaggctgatccaggaggaactagcgaaagcgctagatgccaaaatggcgtacctgatg
gcccagatccagccggcccatgtgaagagcacggcaggtcggccaggacctccaggcccc
tcggggaaagaagggagcgacggtcgccccggaccaccaggggagcctggcatgcctggg
cagaacggaggagacggcatgaggggacccatgggtcctaaaggtgagagaggatccaga
ggagacaagggagaaaacggagttggacagagaggagagactggaccatcaggtcctata
ggaccagcaggtatgccaggctatggtaaggacgggcagcccggggcggctggagctcag
ggagaaccagggaaccctggtccccatggccaggcaggccccagtggacccccagggcag
tgtgacccctcccagtgtgcctactatgccagcctgggagcacgaccccacaccaagaac
gtcaaggggaattaa
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