Oncorhynchus mykiss (rainbow trout): 110488229
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Entry
110488229 CDS
T07259
Name
(RefSeq) thrombospondin-3b
KO
K04659
thrombospondin 2/3/4/5
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04145
Phagosome
omy04510
Focal adhesion
omy04512
ECM-receptor interaction
omy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110488229
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
110488229
09144 Cellular community - eukaryotes
04510 Focal adhesion
110488229
09142 Cell motility
04820 Cytoskeleton in muscle cells
110488229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110488229
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omy04147
]
110488229
00536 Glycosaminoglycan binding proteins [BR:
omy00536
]
110488229
Membrane trafficking [BR:
omy04131
]
Endocytosis
Phagocytosis
Opsonins
110488229
Exosome [BR:
omy04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110488229
Exosomal proteins of colorectal cancer cells
110488229
Exosomal proteins of bladder cancer cells
110488229
Glycosaminoglycan binding proteins [BR:
omy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110488229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
cEGF
EGF_3
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
110488229
NCBI-ProteinID:
XP_021416042
Ensembl:
ENSOMYG00000004157
UniProt:
A0A8C7NJ50
LinkDB
All DBs
Position
32:complement(29283078..29318812)
Genome browser
AA seq
955 aa
AA seq
DB search
MDMVRFVLHLLLASAAVLLGLTRASEMQVIDMLELHDARQSASAVGKMSGALGFVSDLYL
VSTLRLPPKLGGVLLGVYNKGDNRKYLEVALMGKVNKVLVRYVREDGKLHTVNLQNPGLS
DGRTQSLLLRVGGLQRNHLHMELYVNCRLADSAQVLPSMVQLPAEAESVEIRNGQKAYAR
LQGSVDSLKLALGGSIAKAGILTDCPFQGDTHFQNSVSADVNAILGDHTKALIGQLIIFN
QILGELREDIREQVKEMSLIRNTILECQVCGFHETHSRCEPNPCYKGLACTETREYPGYR
CGACPDGMTGNGTHCQDIDECALARPCFSPEGCVNTAKGFTCEPCPVGFSGPLLSGLGVE
FAKSHKQKCRDVDECADLYKACVPNSVCINTEGSFRCGPCKESFVGNQTVGCFLRRSCAT
LGFNPCDVNAHCVIKGAARVSCECNVGWAGNGHTCGPDTDIDGYPDQPLPCIDNDYHCRA
DNCVNTPNSGQEDADGDGIGDQCDEDADGDGIKNMEDNCRLVPNKDQQNSDTDSYGDTCD
NCPNVSNGSQKDTDGNGAGDTCDNDIDGDGIPNVLDNCPKVPNPMQTDRDGDRVGDACDS
CPEVNDPMQSDADNDLVGDVCDTNQDMDGDGHQDSRDNCPDVPNSSQLDSDNDGIGNECD
DDDDNDGIPDARPPGPDNCRLIPNPSQTDTNGNGVGDMCENDFDNDSVIDLIDVCPESAE
VTMTDFRNYQTVILDPEGDAQIEPKWIVLNRGMEIVQTMNSDPGLAIGYTAFNGVDFEGT
FHINTATDDDYVGFIFGYQDSSSFYVVMWKQTAQTYWQSLPFRAMAQPGLQLKAVKSRTG
PGEYLRNALWHTGDTPGEVTLLWKDPRNVGWRDKTSYRWHLSHRPQMGYIKVRLYEGMTL
VADSGVLVDTSMRGGRLGVFCFSQEQIIWSNLGYRCNDTVPEDYEFYRKQIHIRV
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggatatggtgaggtttgtgctacatttgctgcttgcgagcgcggcggttctcttgggc
ttgaccagggcttcagaaatgcaagtgattgacatgctggagcttcacgatgccaggcag
agtgcgtccgcggtggggaagatgtcgggggctctgggcttcgtgtcggacctttacctg
gtgtcaactcttcgtctgccgcccaaactgggaggagtgctgttgggagtctacaacaaa
ggcgacaacaggaagtacctggaggtggccctcatgggcaaggtcaacaaagttctggtg
cgctacgtacgcgaggatggtaaactacacactgtgaacctccagaaccccggcctctcc
gatggacgcacccagtcactcctcctccgtgtgggtgggctccaacgaaaccacctccac
atggaactctatgtcaactgccgattggctgactcagcacaggtcctgccatccatggtc
cagctcccagctgaggcagagtctgtggagatacgcaacgggcagaaggcctatgccagg
ctacagggctcagtggactctttgaaactggctttgggtggctccatagccaaagcagga
atccttaccgactgtccgtttcagggagatacacattttcagaattcagttagcgccgat
gtcaatgccattctgggtgaccacaccaaggctttgattggccagctgatcattttcaac
cagattcttggcgaactccgagaggacatcagggaacaggtaaaggagatgtctctgatt
aggaacactatcctggagtgccaagtgtgtggcttccacgagacccactctcgctgcgag
cccaacccctgctataagggcttggcctgtacagagaccagggagtacccagggtaccgt
tgtggtgcctgcccagacggcatgacggggaatggcacccactgccaggacattgacgag
tgtgctctagcccggccctgtttctcgcccgagggttgcgtaaacacggcaaagggcttc
acctgtgaaccatgtcccgtcggcttctccggacccctccttagcgggcttggggtggag
tttgccaagagccacaagcagaagtgcagagatgtggatgagtgtgctgacctctacaag
gcctgtgtgccgaactctgtctgcatcaacacagagggctcgttcaggtgtggtccatgt
aaggagagctttgtaggcaaccagacggtgggctgtttcctgcggaggtcctgcgccacg
ctgggcttcaacccctgtgacgtcaacgcccactgtgtcataaagggtgctgccagggtc
tcctgcgagtgtaatgtgggctgggcaggtaatgggcatacatgtggcccagacacagac
attgatggctaccccgaccaacctctcccctgcatagacaatgactatcactgccgagcc
gacaactgtgtgaacacgcccaactctggccaggaggacgcagacggagacggtataggt
gaccagtgtgatgaggatgcggacggagacggcatcaagaacatggaggacaactgccgt
ctggtccccaacaaggatcaacagaactcggacacagactcgtatggggacacgtgtgac
aactgccccaacgtttccaacggaagccagaaggacacagatggaaacggggctggggat
acctgtgacaatgacattgatggggatggtatcccaaacgtgctggacaactgtcccaag
gtgcccaaccctatgcagactgaccgtgacggggatcgagtgggggacgcttgtgacagc
tgcccggaagtcaacgaccccatgcagtctgatgcagacaacgacctggtgggagatgtg
tgtgacaccaaccaggacatggatggggacggccaccaggattcaagggacaactgtcca
gacgtccctaacagctcccagctggactcagacaatgacggcatcggcaacgaatgcgac
gatgacgacgacaacgatggcattccagatgcgagacctcccgggccggataactgtcgt
ctcatccctaaccccagccagacagacactaatggaaatggcgttggtgacatgtgcgag
aatgactttgacaacgactccgtgatagacttgattgacgtgtgtccagagagcgctgaa
gtcacaatgaccgacttcagaaactatcagacggtcatcctggacccggagggcgatgcc
caaatcgaacccaagtggattgtgctcaatcggggtatggaaattgttcaaaccatgaac
agtgaccctggtttggccataggctacacagcctttaacggggtagactttgaagggaca
ttccacatcaacacggccacagacgatgactacgtgggcttcatcttcggttaccaggac
tcgtccagcttctacgtggtcatgtggaaacagacggcgcagacctactggcagtcgctg
ccttttagggccatggcccagccaggcctgcaactaaaggcagtgaagtcacgtacgggt
ccaggcgaatacctccggaacgccctgtggcacacgggcgacaccccaggcgaggtcacg
ctgctgtggaaggacccccggaatgtgggctggagggacaagacatcctaccgctggcac
ctcagccaccgcccgcagatgggctacatcaaagtgaggctgtatgaaggcatgacattg
gtggcagactcgggcgtgctggtggacacctcaatgaggggtgggaggctgggcgtcttc
tgcttctcccaggagcaaatcatctggtccaacctgggctatcgctgcaacgatactgta
ccagaggactatgagttctaccgcaagcagatccacatcagggtgtga
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