Oncorhynchus mykiss (rainbow trout): 110488337
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Entry
110488337 CDS
T07259
Name
(RefSeq) vacuolar protein sorting-associated protein 52 homolog isoform X1
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110488337
Membrane trafficking [BR:
omy04131
]
Protein recycling
Others
EARP complex
110488337
Endosome - Golgi transport
Tethering complex
GARP complex
110488337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
Sec3_CC
CoV_NSP7
MscS_porin
DUF7491
CENP-F_leu_zip
SHE3
ATG16
COG6_N
Motif
Other DBs
NCBI-GeneID:
110488337
NCBI-ProteinID:
XP_036827515
Ensembl:
ENSOMYG00000023396
UniProt:
A0A8C7RH03
LinkDB
All DBs
Position
32:complement(33052397..33061264)
Genome browser
AA seq
724 aa
AA seq
DB search
MVEGAVTIAVFDVNIAGNSTANVMSYLQDEMQPDTDAMAPLTLGDLDLTTDEFILDEVDI
HIQANLEDDLVKEALKTGVDLRHYSKQVEGELQRIEQASIKDYIKESQNIASLHNQITAC
DSILERMEGMLSGFQSDLSSISSEIQTLQQQSVSMSVRLKNRQAVHSHLSQLVDELVVPG
AMIQVIVDSPVTEQEFLEQLHELNNKINFAKELSFRETLACSDIQDIVDHLKIKAVTKIR
EFILQKIYSFRKPMTNYQIPQNTLLKYSFFYQFLLANERTVAKEIRDVYVDTMSKIYYSY
FKSYSGRLLKVQYEEVADKDDLMGVEDTAKKGFFSKPSLKSRNTIFTLGQRGAVLSPAEL
EGPILIPHTAQRGDCRYPYETLFRSQHYALLDNGCREFLFLSDFFMVAGNSALDLFNSVM
GKTLSLFLKSMSTYVSDCYDSIAVFLCIHIILRFRAITTKRAIPALDKYWEAVLELLWPR
FELILEMNIQSICNTDPQKLGVLDTRPHYITRRYAEFSSAIVSINQTFTSERTHTLLGQL
QVEVENFVLKMAAEFPSRRDQLIFLINNYDMMLNVLMERAADDSKEVEGFQQLLQARSQE
FIEEILSSPFGGMIAFVKASEALIEKGQLDRLKNDEAQITQLIRGFTSTWKQSVEALSQD
VMRSFTNFKNGTGIIQGALTQLIQYYHGFHKVLSQPTFRSLAVRSELINLHHLMVEVKKH
KPNF
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggtggagggagcagtgactatagctgtgttcgatgtaaacatagctggcaactcgacg
gcgaatgtcatgtcatatttacaagatgagatgcagcctgacacagatgccatggcccct
ctcaccctgggggacttggacttgaccacagacgagttcatcttggatgaagtggatatt
cacatacaagctaatctggaagatgacttggtgaaggaggcactgaaaacgggtgttgac
ctcaggcattactctaaacaggtggaaggtgaactccaacgaattgaacaagcttccatc
aaagactatatcaaggaaagccagaacattgcctctctgcacaaccagatcacagcctgt
gactccatactggagcgaatggagggcatgctgagcggcttccagagtgacctctcgtcc
atcagcagtgagatccagactctgcagcagcagtcggtcagcatgagcgtgcggctgaag
aacaggcaggccgtacacagccacctcagccaactggtggatgagctggtggtgcccgga
gctatgatccaggtaatcgtggatagcccggttacggagcaggagttccttgagcagctc
catgagctcaacaacaagatcaattttgccaaagagctcagcttcagggagactttggcc
tgctctgacatccaggacatcgtggaccacctcaaaatcaaggctgtcacaaagatcaga
gaatttatcctgcagaagatttattccttcagaaagcccatgaccaactatcaaatcccc
cagaacactctccttaagtacagctttttctatcagttcctcttggcaaatgaaaggaca
gtagctaaggagatcagggatgtgtacgtggacaccatgagtaagatctattacagctac
ttcaagtcctacagcggcaggctgctcaaagtacagtatgaggaggtggcagacaaagat
gacctgatgggagtggaagacacggccaagaaaggtttcttctccaagccctccctgaag
agcaggaacaccatcttcaccctgggccagcggggggccgtgctgagccctgccgagctg
gaggggcccatccttatcccccacactgcccagagaggggactgcaggtatccctatgag
acgctgttccgcagtcagcactacgccctcttggacaatggctgtcgagagttcctcttc
ctgtctgacttcttcatggtggctggaaactctgcgctggacctcttcaacagcgtcatg
ggaaagactctcagcttgttcctgaagagcatgtccacctatgtatcggattgctacgac
agcatcgctgtgtttctgtgtatccacatcatcctgcgtttcagagccatcacaaccaag
agggccatcccagccctggacaagtactgggaggcagtgctggagctgctgtggcccagg
tttgagctcatcctggagatgaacattcagagcatctgcaacacggacccccagaaactg
ggcgtgttggacaccagaccacactatatcacacgtagatacgcagagttctcttctgcc
attgttagcattaaccagacattcaccagcgagcgaacccacaccctccttggtcaactg
caggttgaagtggagaactttgtcctgaagatggctgcagaattcccttcacgcagggac
cagctcatcttcctcatcaacaactacgacatgatgctcaatgtcctcatggagagggca
gccgatgacagtaaagaggttgagggcttccagcagctcctccaggccaggagccaggag
tttattgaggagattctgtcctccccctttggtggcatgatagcgtttgtgaaggcgagc
gaggcgttgatagagaaaggccagctggatagactgaagaatgatgaagcccaaatcacc
cagctaatcagggggtttaccagcacatggaaacagtctgtggaagctctgagtcaggat
gtcatgagatccttcaccaacttcaagaacggcactggtatcattcagggggcactcacc
cagctcatccagtactaccatggcttccacaaggtgctgtcccagcccaccttccgcagc
ctggccgtgcgctcggagctcatcaacctgcaccacctcatggtcgaggtcaagaaacac
aagcccaacttctaa
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