Oncorhynchus mykiss (rainbow trout): 110488835
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Entry
110488835 CDS
T07259
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X2
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110488835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110488835
Enzymes [BR:
omy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
110488835
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110488835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_22
TniB
AAA_16
MMR_HSR1
ATP_bind_1
Motif
Other DBs
NCBI-GeneID:
110488835
NCBI-ProteinID:
XP_021416932
Ensembl:
ENSOMYG00000037464
LinkDB
All DBs
Position
14:complement(13153679..13158596)
Genome browser
AA seq
441 aa
AA seq
DB search
MVTEGPENTGEEGVGAGAGGARFDLEKETELRFEVEAGEKVHLELLTGLAEVFGSELNRN
KKYTFGPGSKIAVFTWQGCSVSLSGKTEVAYKSKDTPMLLYLNTHTALEQMRRQAERDNE
RGPRVMVVGPTDVGKSMLCRLLLNYAVRLGRRPTLVELDVGQSGVSVPGTMSALCIERPA
DVEEGYSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEENRKASVGGCIINTCG
WVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVVRSKDC
RRESRDEKIREYFYGFRSALFFPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDDTQLK
LVPVTPGRDLTHHVLSVSCADEGEEGAGGVRRGVLESPVCGFIVVTNVDTQAQVMTVLSP
APRPLPRHTLLIMDIRFIDLK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggtgactgagggcccagagaacactggtgaggagggagtgggggctggcgctggtggc
gcgaggtttgacctggagaaggagactgagctgcggttcgaggtggaggccggggagaag
gtgcatctggagctgctcacaggattggcggaggtctttggctctgagctcaaccgcaac
aagaagtacacgtttggaccaggttccaagattgctgtgttcacctggcagggctgtagt
gtttctctctcggggaagacagaggtggcgtacaaatcaaaggacacacccatgctgctc
tacctgaacacacacactgcactggaacagatgagacgacaggcggagagagacaacgag
aggggaccacgggtaatggtggtggggcctacagatgtggggaagtcgatgctgtgtagg
ctgttgctgaactacgctgtcaggctgggcaggaggcccacactggtggagctggatgtg
ggccagagtggggtgtcagtcccgggcacaatgtcagcactgtgtattgagcgtccggct
gacgtggaggaggggtactccgtacaggcgccgctggtctaccactttggttccaccact
ccaggaaccaacatcaaactctacaacaagttgacgtcgtgtctggccgaagtgttctcc
cagcgctgtgaggaaaacaggaaggccagtgtgggcggctgcatcatcaacacctgtggc
tgggtgaagggttctggctaccaggccctggtccactgtgcctcagccttccaggtggat
gtggttctggtgctggaccaggagaggctttacaacgagttgaagcgggacctaccgcac
ttcgtccgagttgtgctgctacccaaatccggaggggtcgtggtgcgctccaaagactgc
cggcgtgaatctcgggacgagaagatccgggagtacttctacggttttcgcagtgccttg
ttcttccctcacgctttcgacgtgcgcttttctgatgtgcgcatctacaagatcggagcg
ccttccatcccggactcttgcctgccgcttggcatgtcgcaggacgacacccagctgaag
ctagtccctgtgacgcccggtcgtgacctcacacaccatgtgctgagcgtaagctgtgcc
gatgagggggaggagggggctggaggggtgcgcaggggtgtgctggagagcccagtgtgt
ggcttcattgtggtgactaacgtggacacacaggcacaggtgatgaccgtgctctcgccc
gcccccagacccctccccagacacacactgctcatcatggacattcgcttcatcgacctc
aaatag
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