Oncorhynchus mykiss (rainbow trout): 110488861
Help
Entry
110488861 CDS
T07259
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy02010
ABC transporters
omy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
110488861 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110488861 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
omy02000
]
110488861 (abca1b)
Transporters [BR:
omy02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
110488861 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
110488861
NCBI-ProteinID:
XP_036798914
Ensembl:
ENSOMYG00000039123
UniProt:
A0A8C7UL50
LinkDB
All DBs
Position
14:complement(13801933..13840874)
Genome browser
AA seq
2299 aa
AA seq
DB search
MSISTQLGLLLWKNFTYRRRQTLQLLIEIVWPLLIFFILISVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRNPTPGESPGVVGNFNESIISRLFSDAKKILLYSQNDR
NLDGFKGLIQALKTLQANTKGFKLKDFLHNNETLSTFLLRNASFSEHAVRQIIEADVNLE
KVLVKGFGVHLRDLCSSNGTRVEDFVTITDSKVSSLVQKMLCVSPGSWLNQAESHFLHNL
DFLKPIRKDVRTDPEAVQQVAKATDKLLESLGSLALELASMKSWRDLRNEIIFLTENATS
SPSHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHNTTNGEEPVSAYDNTSTP
YCNAMMRNMESSPVSRMIWQALKPLLMGKILYTPDTPATQKIIHEVNRTFQELGVLRELG
GMWEEIKPKVWTFMESSEHMDLVRTLLKNNGTGSFFTSQLAGSEWTVEDISNFLTKHSQD
THPHGTAFTWREVFNETDQAIMSISRFMECVNLDKMEPVANEERMVNKSMALLDDRKFWA
GIVFPDIEANSSELPANVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDIIEHSIITAVTGVKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAI
IIKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVVLLKMGNLLPYSD
PGVIFLFLGSFAVVTIMQCFLISTMFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKIVASLLSPVAFGFGCEYFALFEEQGIGIQWNNLFNSPMEEDDFSLTTAIIMMYFDSFL
YMVMTWYIESVFPGQYGIPRPWYFLFSKSYWFGEGDNRKTDFSQNKRRSCEAVCIEEEPA
HLKTGVFIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT
SGTAYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKSEIE
QILIDTGLPHKRTSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL
LLQYRLGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKG
PEPFLSSCRNSSSTVSLPKKEEDCPSESSSDAGLGSEHESEVATIETAQAASICESAFVP
PDVSLISSLIFKHVPAARMVENLGHELIYVLPYGAAKDGAFVELFKDMDNHLPDLGISSY
GVSDTTLEEIFLKVAEDNGVDTEVPSDGTLPLRRRRRNHAFGGGNAFGGDHQSCLRPQID
DDNNEHNDSDADPESRETDFLSGSDGKGSYKVTGWSLKRQQFVALIWKRFLYAQRSRKGF
FAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYEEQSLFISDDAPEDASTQRLLSA
LTEGPGFGTRCMEGQPIPDTPCTMGDEDWSIPEVPETLLELFRTGNWTMEEPSPACACSC
DGRKKMLPECPAGAGGLPPPQMKISETDTLQNLTNRNISDYLVKTYAEIIGKSLKNKIWV
NEFRYGGFSLGARSTNVLPAADEIDDAIARVRKIFELEKGAAADRFLESLSSFINGLDTK
NNVKIWFNNKGWHSMGAFLNVMNNGILRSNLPPGKDPSKFGIRAFNHPLNLTKEQLSQVA
LMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWTANFIWDM
CNYIVPATLVIIIFICFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAY
VVLTSVNILIGINGSISTFVMELFGDNEIGGINNILKNVLLIFPHFCLGRGLIDMVKNQA
MADALERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLFQYRFCIKPINLHTKLPP
VGEEDEDVARERQRIVNGLGHGDILELRQLTKVYKRKQKPVVDRLCVGIPPGECFGLLGV
NGAGKTTTFKMLTGDSMVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINELLTGREHL
EFYAVLRGVPEKEVCEVAEWGIRKLGLVKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVF
LDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGS
VQHLKNRFGDGYTIILRVAGADPDLPPVMKFIESELPGSTLKEKHRNMLQYQLPSSLTSL
AHIFSILAKNKDLLRIEDYSVSQTTLDQVFVNFAKDQSDDYHSKDNSVKRKEAVVDTTPL
SLRQAEEKLAEERLKESLV
NT seq
6900 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctcaactcagctgggcttgttgttgtggaagaactttacctacaggagaagg
caaacgctccaactgctgattgagatagtatggcccctgttgatcttcttcattttgata
tcagtgagactgaactaccctccatacgaacaacatgaatgtcatttccccaacaaggcc
atgccctcggcgggcaccctgccctggatccaaggcatcatctgcaacgccaacaacccc
tgcttccgcaaccctactcctggagagtcccccggggtcgtgggcaacttcaacgagtcc
ataatctctcgtctgttctccgatgccaagaagatcctgctgtacagtcagaatgaccgg
aatctggatggctttaaaggcctcatccaagccctgaagacactacaggccaacaccaaa
ggattcaagctcaaggatttcctccacaacaatgagaccctgtccactttcctcctgcga
aacgcttccttctccgaacacgccgtgcgccagatcattgaggccgacgtgaacttggaa
aaggtgctggtcaaaggcttcggtgtccacctgagggacttgtgcagcagcaacggcacc
agagtagaggactttgtgaccatcacagacagcaaggtgtccagtctggtccagaagatg
ctctgcgtgtccccaggctcctggctcaaccaggcagaaagccacttcctccacaacctg
gacttcctcaaacccatacggaaagatgtgaggactgaccctgaagccgtccagcaggtg
gccaaggctacagacaaactcctggagagcctgggctccctggccttggagctggccagc
atgaagagttggagagacctgcgtaacgagatcatcttcctcacggagaacgccacatcc
tcccccagccacatgtaccaggctgtgtcgcgcatcgtctgtggccatcccgagggtggc
ggactaaagatcaagtccctcaactggtacgaggacaacaactacaaggctctgttcggc
aaccacaacacaaccaacggagaggagcccgtctctgcctacgacaacacatccactcca
tactgtaacgctatgatgaggaacatggagtccagccccgtgtccaggatgatctggcag
gccctgaagcctctgctcatgggcaagatcctgtacacccccgacaccccagctacacag
aagatcatccacgaggtgaacagaacattccaggagctgggggtcctcagagagctgggg
ggcatgtgggaggaaattaagcccaaggtctggaccttcatggagagcagtgaacacatg
gacctagtaaggaccctattgaagaacaatggcactggcagcttcttcacctcccaactg
gcgggctcagagtggactgtggaggacatctccaacttcctgaccaaacattcgcaggac
acgcatccccacggtaccgccttcacctggagggaagtcttcaacgagacggaccaggcc
atcatgagcatatcccgcttcatggagtgtgtaaacctggataagatggagcccgtggcc
aatgaggaaaggatggtcaacaaatccatggcgctcctggacgataggaagttctgggcg
gggattgtgtttccagatattgaggccaacagctctgaactgccggccaacgtcaactac
aagatccgcatggacatcgataacgtggagcgcaccaacaagatcaaagacggatattgg
gaccctggtcctcgtgctgacccatttgaggacctgcgctacatctggggtggcttctct
tacctccaggacatcatcgagcatagcatcatcacagcagtaactggcgtcaaggagaag
acgggagtctacatccaacagatgccctacccctgctacgtggatgacatcttcctgcgg
gtgatgagtcgctccatgcccctcttcatgaccctggcctggatgtactctgtggccatc
atcatcaagagcgtggtgtacgagaaggaggcaaggctcaaggagaccatgaggatcatg
ggattggacaacggcatcctgtggttcagctggttcatcagcagcctcatccccctgcta
atttctgctggcctgctggttgtgctgctcaagatggggaacctgctgccctacagtgac
cccggcgtcatcttcctgttcctgggttccttcgccgtggtaaccatcatgcagtgcttc
ctcatcagcacaatgtttgcccgtgccaacttggcggcggcatgcgggggcatcatctac
ttcaccctctacctgccctacgtcctctgtgtggcctggcaggactatgtgggctttggg
gccaaaatagtcgctagcctgctgtccccagtggcctttggctttggctgtgagtacttt
gccctgttcgaagagcagggcattggcatccagtggaacaacctgttcaatagccccatg
gaggaggacgacttcagcctgaccaccgccatcatcatgatgtacttcgactccttcctc
tacatggtgatgacctggtacatcgagtctgtcttccctggtcagtatggtattcccagg
ccctggtacttcctcttctccaagtcctactggtttggagaaggggacaacaggaagact
gacttcagtcagaacaagagaaggagctgtgaagctgtctgtatagaggaagagccagcc
cacctgaaaactggtgtcttcatagagaacctagtcaaggtgtaccggcacgggaagaag
ctggctgtggatgggctgactctgggcttctacgaaggacagatcacctctttcttgggc
cacaacggagcagggaaaaccaccactatgtcgattctaacgggactgtttccacctacc
tctggcactgcttacatcatgggaaaagacatccgatcggagctgagtgctattcgacag
agtctgggcgtttgtccacagcacaacgttctcttcagcatgctgaccgttgaggagcac
atctggttctatgctcgcctgaagggtctatctgaggaacaggtgaagtctgagatcgaa
cagatcctgatagatactggcctgccgcacaaacgcacttccaggaccagcacactgtcc
ggagggatgcagaggaagctctctgtggctctggcctttgtcggggggtcaaaggttgtg
attctggacgagcccactgcaggggtcgacccctacgcccgcaggggcatctgggacctc
ttgctccaatatcgtctaggtcgtaccatcatcctctccacccaccacatggacgaggcg
gacatcttgggcgaccgcattgccatcatctcccacggcaagctgtgctgcgtgggctcc
tccctcttcctgaagaaccagctgggtacaggctactacctcaccctggtcaagaagggc
ccagaacctttcctcagctcctgccgcaactcctccagtaccgtctccttacctaagaag
gaggaggattgtccctctgagagcagctctgacgcaggccttggcagcgaacacgagagc
gaagtagctaccatagaaactgctcaggcagcttccatctgtgaaagtgccttcgtgccc
cccgacgtctccctgatctccagcctgatcttcaagcatgtcccggctgcccgcatggtg
gaaaaccttggccacgagctcatctacgtcctaccctatggcgccgccaaggacggagcc
ttcgtggagctcttcaaggacatggacaatcacctccctgacctgggcatatccagctat
ggcgtctccgacaccaccctggaagagattttcctgaaagtggcagaggacaacggagtt
gacactgaagttccctcagacggtacactccccctgcgcagacgtcgtagaaatcatgcc
tttggtggaggaaatgccttcggtggagaccaccagagctgccttagaccccagattgat
gacgacaacaatgaacataacgactcggacgcagacccagaatccagagagacagacttc
ttgagcggatcggacggtaaaggctcctacaaggtgacgggatggagtctgaagaggcag
cagtttgtggccttgatttggaagaggtttctgtacgctcaacgctccagaaaaggtttc
tttgctcagattgtactccctgctgtgtttgtgtgcattgccctggtcttcagtctcatc
gtcccacctttcggaaagtaccccagtctggagctgcagccatggatgtacgaagaacag
tcccttttcatcagcgatgacgcccctgaagacgctagcacacaacggttattgagtgcc
ctcaccgaaggacctgggtttggaacgcgctgcatggaaggacagcccatacctgacact
ccctgtacgatgggtgacgaagactggtccataccggaggtcccagagacccttctggaa
ctcttccgcacaggtaactggaccatggaggagccgtcccccgcatgcgcctgcagctgt
gacggccgcaagaaaatgctccctgagtgtcctgctggagccggaggactgccaccccct
cagatgaagatcagtgagacagacaccctgcaaaatctgaccaacagaaacatctctgac
tatctggtgaagacctatgcagagatcattgggaaaagtttgaagaacaaaatctgggta
aatgaatttaggtacggtggcttctcattgggtgccaggagcaccaacgtcctccccgca
gctgacgaaattgacgacgccattgctcgagtgaggaagatttttgaattggagaagggt
gcagccgcagaccgattcctggagagcttgtctagcttcatcaatggtctggacaccaag
aacaatgtcaagatttggttcaacaacaagggatggcacagcatgggagccttcctcaac
gtgatgaacaacggcatcctgcgctccaacctgccccctggcaaggaccccagcaagttt
ggcatccgcgccttcaaccacccgctcaacctcaccaaggagcagctgtcccaggtggca
ctgatgaccacctcagtggacgtcctggtgtccatctgcgtgatctttgccatgtccttc
gtcccagccagcttcgtagtcttcctcatccaggagagagtgagcaaggccaagcacatg
cagttcatcagcggtgtgcagcccctgctttactggactgccaacttcatctgggatatg
tgtaactacatcgtcccggcaacgctcgtcatcatcatcttcatctgcttccaacaaaag
gcctatgtgtcgtccaccaacctgccagtgctggccctgcttctgctcctctatggctgg
tctatcactcccctgatgtacccggcatccttcttctttaagatccccagcacggcctac
gtggtgctgacctccgtcaacatcctcatcggcatcaacggcagcatctccaccttcgtc
atggaactcttcggagacaacgaaattgggggtatcaacaacatcttgaagaacgttttg
ctgatcttccctcacttctgtcttggccgaggtctcatcgacatggtgaagaaccaggcc
atggccgacgctctggagagatttggggagaaccgcttccgatcccctctggaatgggac
atggtgggcaagaacctgtttgccatggccgtggaaggagtggtcttcttcatcatcacc
gtccttttccagtaccgcttctgcatcaagcccataaacctgcacaccaagctccctccg
gtgggcgaggaggacgaggacgtggccagagagaggcagaggatcgtcaacggactggga
cacggagacatcctggagctccgacagctcaccaaggtctacaagaggaagcaaaagcca
gttgtagaccgcctgtgtgtgggcatccctcctggagagtgctttggcctcctgggtgtg
aacggagctggaaagaccaccacattcaaaatgctgacaggagactccatggtcaccagt
ggagaagctttcctggctggaaaaagtatactgcgggagatagacgaagtgcaccagaac
atgggctactgtccccagtttgacgccatcaacgaactgctgacaggcagagagcacctg
gagttctacgccgtcctgcgtggagtgcccgagaaggaagtgtgtgaggttgctgaatgg
ggcatccgtaagctgggcctagtgaagtatgtggacaaggcagcaggaagctacagcgga
ggaaacatgaggaaactctccacggccatggccctaataggaggaccacccgtcgtgttc
ctggacgagcccactactgggatggaccccaaagcacgcagggccttatggaactgcatc
cacagcgtcatcaaggagggacgctccgtggtgctcacctcgcacagtatggaggaatgt
gaggccctgtgcaccagaatggccatcatggtcaacggcagattccgttgcttggggagc
gttcagcacctaaagaataggttcggagacgggtacaccatcatcctgcgtgtggcgggg
gcggaccctgacctgccgccggtgatgaagttcattgagagcgagctgccgggcagcacc
ctgaaggaaaagcacaggaacatgctgcagtaccagctgccttcctctctcacctccctg
gcacacatcttcagcatcctggccaagaacaaggacctgcttcggatagaagactactct
gtgtcgcagaccacactggaccaggtgtttgtgaactttgccaaggaccagagtgacgat
taccactcaaaagacaattcagttaagcgcaaagaggcagtggtggacactaccccgctt
agcttgcggcaggctgaagagaagctagccgaggagaggctaaaggagagcttggtgtga
DBGET
integrated database retrieval system
