Oncorhynchus mykiss (rainbow trout): 110489347
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Entry
110489347 CDS
T07259
Symbol
pabpc1b
Name
(RefSeq) polyadenylate-binding protein 1b isoform X1
KO
K13126
polyadenylate-binding protein
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03015
mRNA surveillance pathway
omy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110489347 (pabpc1b)
09123 Folding, sorting and degradation
03018 RNA degradation
110489347 (pabpc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110489347 (pabpc1b)
03041 Spliceosome [BR:
omy03041
]
110489347 (pabpc1b)
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110489347 (pabpc1b)
mRNA cycle factors
Stress granule specific factors
110489347 (pabpc1b)
Spliceosome [BR:
omy03041
]
Complex C
Other components
Complex C specific factors
110489347 (pabpc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RBD_RDR6
RRM_7
RRM_occluded
YflT
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
110489347
NCBI-ProteinID:
XP_036827224
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All DBs
Position
32:45493..60677
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AA seq
635 aa
AA seq
DB search
MNPGAPTYPMASLYVGDLHQDVTEALLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDEKLREIFSKYAEYGSAMSIRVMTDDSGKSRGFGFVS
FERHEDAQKAVDEMNGKELNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLY
VKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRI
VATKPLYVALAQRKEERQAHLTNQYMQRMATVRPVPNPVLNPYQPAPPSGYFMAAIPQAH
NRAAYYPANQIAQLRPSPRWATQGVRPQHFQNMPGSIRPSTPRQPSFSPMRPTNQVPRMM
STRSVGPQTMGPRAPSAPVGGAPVRGVPQYKYATGVRNPQNHVNSQPQVTMQQPAVHVQG
QDPLTASMLAAAPPQEQKQMLGERLFPCIQNMHPSLAGKITGMLLEIDNSELLHMLESPE
SLRSKVDEAVAVLQAHQAKELVQKTVPNSAGGPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccggtgctcctacttaccccatggcatccctgtatgtcggtgatcttcatcaa
gatgtgaccgaagctctgctatacgaaaaattcagccccgccggggccatcctttccatc
cgggtctgcagggatatgatcacccgtcgttccctcgggtacgcctatgtcaacttccaa
cagccagctgatgctgagagggctctagacaccatgaactttgacgtgatcaagggtcgt
cctgtccgcatcatgtggtctcagcgtgacccatccctgaggaagagcggggtgggcaac
atcttcatcaagaacctagacaaatctattgacaacaaggccctctacgacaccttttct
gccttcggcaacatcctgtcctgcaaggtggtttgtgatgagaatggctcaaaggggtat
ggctttgtgcattttgagacccaggaggcggctgaaagagccattgagaaaatgaacggc
atgctgctcaatgacaggaaagtgtttgtgggacgattcaaatctcgcaaagaacgtgag
gctgagcttggtgcccgggccaaagagttcaccaacgtttacatcaagaactttggtgaa
gatatggatgatgagaaactgagggagatcttcagcaagtatgccgagtatggcagtgcc
atgagtatccgtgtcatgactgatgacagtggcaaatccagaggctttggctttgtgagc
ttcgagaggcacgaggacgcccaaaaggctgttgatgagatgaatgggaaggagctgaat
ggaaagctcatctacgtgggccgcgcccagaagaaggtggagcgtcagacggagctgaaa
cgcaagtttgaacagatgaaacaggatcgcatgacgcgctaccagggtgtcaatctctac
gtgaagaatcttgacgatggaattgatgacgagcgcttgcgtaaagaattctccccattc
ggcaccatcaccagtgccaaggtgatgatggagggtggtcgcagcaagggcttcggcttt
gtgtgcttctcctccccggaggaggccaccaaggccgtgacggagatgaacgggcgcatc
gtggccaccaagccgctgtacgtggcgctggctcagaggaaagaggagcgtcaggctcac
ctcaccaaccagtacatgcagaggatggccaccgtccggcccgtacccaacccagtcctc
aacccctaccagcctgcccctccttctgggtacttcatggctgccatcccacaggctcat
aacagagctgcttactaccctgccaaccagatagcccagctgagacccagccctcgctgg
gccacccagggtgtgagacctcaacacttccagaacatgccaggctccatacgtccttcc
acacccagacagcccagcttcagccctatgaggccaaccaaccaggtgcctcgcatgatg
tccacgcgaagcgtgggcccccagaccatggggccccgcgccccttcggccccagtgggt
ggagccccggtgcgtggcgtgcctcagtataagtacgccaccggagtccgcaacccacag
aaccacgttaactcacagccccaagtcactatgcagcagcctgctgtccatgtgcagggc
caggaccctctgactgcctccatgctggccgctgcaccacctcaggaacagaagcagatg
ttgggtgagcgcttgttcccgtgcatccagaacatgcaccccagcctggctgggaagatc
actggcatgctgctagagatagacaactctgaactgcttcacatgctggagtctcccgag
tctctccgctctaaggtggatgaggctgtggctgtgctgcaggcccaccaggccaaggaa
ttagtccagaagactgtccccaactctgctggtggtccgagtgtctga
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