Oncorhynchus mykiss (rainbow trout): 110489382
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Entry
110489382 CDS
T07259
Name
(RefSeq) collagen alpha-2(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04510
Focal adhesion
omy04512
ECM-receptor interaction
omy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110489382
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110489382
09142 Cell motility
04820 Cytoskeleton in muscle cells
110489382
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
omy00535
]
110489382
Proteoglycans [BR:
omy00535
]
Extracellular matrix (ECM) proteoglycans
Others
110489382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
110489382
NCBI-ProteinID:
XP_036826942
Ensembl:
ENSOMYG00000005383
LinkDB
All DBs
Position
32:complement(14003090..14039542)
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AA seq
699 aa
AA seq
DB search
MRILCCDWLKRIEIHLKKLRSQKKGMGWERVLNGPPGPQGNPGPPGPSGTPGSDGIDGEK
GPPGPSGPPGLKGDPGEPGPDGAPGENGIDGLMGAKGDGGPIGNPGPKGQPGPGGEPGPT
GPGLPGLAGAPGPIGLPGEIGQTGPTGILGEPGPPGIPGPPGKPGPPGKFLGGEEGSADF
QCPINCPAGPKGPQGLQGVKGHKGRAGVLGEPGSIGKLGTKGEVGISGEQGIPGPPGPMG
LRGYPGMMGPKAEAGPRGYKGINGPVGQPGPPGEEGPQGPPGEAGEKGDLGGRGIKGPQG
AVGKKGENGLPGIDGKDGTPGIPGIKGAPGQAGRPGGPGHQGTAGLPGSPGTKGGPGGKG
EPGPRGHVGMSGAPGPQGEPGLPGEAGMEGVPGPKGDRGQRGAVGPQGIVGKAGNKGMRG
PMGVPGAQGISGTKGDKGFQGKVGAKGDFGDPGVEGLAGEKGEKGLGGEPGPKGQQGVRG
ETGFNGPTGDSGKPGDQGPGGLPGPRGLNGERGVPGMPGIVGAAGRDASDQHIIEVVLKM
LQERLAAVAVSAKRAVLGGAGVMGPPGPPGPPGAPGAQGPHGLTGARGIPGMFGASGQIG
NTGLKGKRGAKGDRGDPGKPHVGQPGPPGITGPPGIDGVARNGKPGERGPQGSAGEAGRP
GKAGPTGLPGFCEAAACLAASAYTSPRLQDSARVKGPGV
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaggattctgtgttgtgactggttgaagcggattgaaatccatttaaaaaagctgcgt
tcccaaaagaaggggatgggatgggagagggtcttgaacggtcctccaggacctcaaggc
aatcccggtccgcccggtccctctggcacccccgggtctgatggcattgatggggaaaag
ggacctcctgggccttctggcccaccagggttgaagggggacccaggtgagcctggtcca
gatggagctcccggagagaacggcatcgacggtttgatgggagcaaagggagacggcggc
cctatcgggaaccctggacctaaaggccagcctggacctggtggtgaacctggacccact
ggacccggactgcctggactggctggagccccaggcccaatcggccttcccggtgagatt
ggacagactggacctacgggcatattgggagaacctggccctccaggaattccaggaccc
ccaggaaaaccaggtcctccagggaagttcttgggaggagaggagggcagtgcagacttc
cagtgtccaatcaactgcccagcagggcctaagggtccccagggtctgcagggggtcaag
ggacacaaaggtcgtgctggtgtgctgggagagcctggcagcattgggaaactgggtacg
aagggagaggtcggcatctctggtgagcagggaatcccaggacccccgggtcctatggga
ttgaggggttacccaggaatgatgggccccaaggcagaggcgggccctcgtggttacaag
ggcatcaatggaccagttggccaacctggacccccaggtgaggagggacctcagggacca
cctggagaggctggggagaaaggagatttaggtggtcgaggtatcaagggcccacaagga
gctgttggcaagaagggagagaacggtctgcctggtatcgatggaaaggatggcactcct
ggcatccctggaatcaagggtgccccagggcaggctgggaggcctggtggtcccggtcac
cagggaacagcaggtttgcctggcagccccggaaccaagggtggacctggaggcaaggga
gagcctggtcccagaggtcatgttggaatgtctggtgccccaggacctcagggtgagcct
ggtcttcctggtgaagctggtatggagggcgttcctggacctaagggtgacagaggccag
aggggagctgtagggccacagggtattgtcggcaaggctggcaacaagggtatgagaggg
cctatgggtgtcccaggggctcaaggcatctcaggaaccaagggagacaagggattccaa
ggaaaagttggtgcgaagggagactttggtgatcctggtgtggaaggcttggctggggag
aaaggagagaagggtttgggtggtgagcctggacccaaaggacagcaaggagtgagggga
gagacagggttcaatggccccacaggagactcaggcaaaccaggagaccagggaccagga
ggactgcctgggcctcgcggcctcaatggggagagaggagttccaggcatgccaggcatt
gtgggggcagcaggacgggatgcatcagaccagcacatcattgaggtggttctgaagatg
ctgcaagagcgtctggcggctgtagcggtgagcgctaagcgtgccgtactgggtggagcc
ggtgtcatgggtccccctggtcctcccggacccccaggagctcctggtgctcagggccca
cacggcctcaccggcgcccgcggcatccctggcatgtttggagcctccggacagatcggc
aacactggactgaaaggaaagagaggagcgaagggagacagaggagatcctggtaaacca
catgttggccagccaggacccccgggaataacaggtccccctggtattgacggagtggct
cgaaacggaaagcctggtgagcgaggcccccagggctcggcaggagaggctggccgtcct
ggtaaggcgggccccactggtcttccagggttctgtgaggctgcagcctgcctagctgcc
tcggcctacacctcccccagactacaggactccgccagggtcaagggcccaggagtctaa
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