Oncorhynchus mykiss (rainbow trout): 110489432
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Entry
110489432 CDS
T07259
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
omy00535
]
110489432
Proteoglycans [BR:
omy00535
]
Extracellular matrix (ECM) proteoglycans
Others
110489432
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
VWA_3
DUF4992
Motif
Other DBs
NCBI-GeneID:
110489432
NCBI-ProteinID:
XP_036826648
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All DBs
Position
32:32685687..32782036
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AA seq
1883 aa
AA seq
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MQAIGLKTWVWSPLLCLVLISLLPVQAQGQVATPRRLRFKVLSATQLHVSWKEPKGEFES
YRFIYSTQSDAEETELEMTKKEAKVIIDFDPRMLYTVKVTAVKGAQESKPLQGTFKKPDN
ENVQPQNVRPKNQKDTSVTEENNEISEEQFMCKTPAIADIVILVDGSWSIGRINFRLVRM
FLENLVSAFHVEFDKTRIGLAQYSGDPRMEWHLNTFTTKEAVIDAVKNLPYKGGNTLTGL
ALTYILENSYKPESGSRAGVPKIGILITDGKSQDDVKPPAQSLREAGIELFAIGVKNADE
KELKAIGSPPEETHVYNVADFSVMSSIVERLTRTVCDRVEQLDKAIKGDRGPEVTMTSPR
GLVTSEVTARSFRVSWTHAPGTVEKYRVVYYPTSGGQPEEKVVQGTVDTVVLNYLLSLTE
YQVSVFAIYASSASEALRGSATTLALPTVNNLELFDITHNTMRARWRVAEGASGFMILYA
PLTEGDDADEKEVKVAETVNEVELENLTPDTEYTVTVYAMYGEEASDPMTSQETTLPLTP
ARNLRFSNVDHSSARLTWEATSKKASGYRIMYVKTNGVQTNEMDVGRITTLLLRNLTSLT
EYTVAIFAIYDEGQAEPLTDSFTTKTVPEPLNLRSSEVSTESFRVTWEHSAQDVVLYRLT
WTPIRGGDTKEMLVNGKMNSHLLTGLRPITEYEVSLIAVFRNEEASNAVTLTESTVARTT
TTTKATTTTTTTHATTTAVVHLGVRNLLLSDHTTFSMEVSWEQQDRNVRQYRVAYVTARG
DRAEETKMVPGGQNSLLLQPLLSDMEYKVTVTPVYADGDGPGVSRMGRTLPLSAPRNLRV
SEEWYNRFRITWDTPPSPTMGYRVVYKPISAPGPALETFVGEDVNTMLILNLMSGTEYGV
RVIASYTTGSSETLTGKARTLYLGVTNLNTYQVRMTSVCAQWGAHRHATLYRVVIESLLN
GYKQEAKLGGGTTRHCFNDLTANTQYKISVYAQLQDTEGPAVSTTEKTFPVPTPAPTRPP
TTTAPPSIPSVKEVCKAAKADLAFLVDGSWSIGDDNFLKIIRFLHSTTGALDIIGPDGTQ
VAIVQFSDDARTEFKLNSYDNKERLLEAINRISYKGGNTKTGLAIRHVKDTIFTVGGGIR
RGIPKVLVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSERHVFF
VDDLDAFKKIEEKLVTFVCEAATATCPSVAMSGSTLPGFRMMEMFGLVEGLYGHVSGVSM
EPGTFNSFPCFRLHNNSLLAQPTKFIHPEGLPSDYTITMLFRLLPETPKEPFALWEILNK
DNEPLVGVILDNSGKTLIFFNHDYKGQFQTVTFEGPEIKKLFYGSFHKLHMAISKTSAKA
VIDCKLVGEKAINAAGNITTDGLEVLGRMVRSRGKKDSSAPFQLQSFDIVCSTSWASRDK
CCELPGLRKEEDCPAMPRACTCSQESKGPPGPTGPPGGPGIRGGRGDRGEPGAVGPIGPV
GDAGSPGLQGPRGPQGPGGRTIMGPPGGPGERGEKGAAGAPGIQGIPGSPGPSGRAGQTG
TRGLPGKDGPQGRTGPPGTIGTPGAPGSPGSSGPPGSLGNQGPPGPAGNKGEKGERGDLQ
SQASVQAIARQVCEQLIQSHMARYSSILNHIPSAPVSVRTVPGPPGEPGRQGGPGPQGEQ
GPPGRPGFPGSNGENGQAGARGLSGEKGDKGSPGAGVQGPRGPVGPPGPTGQGRTGSQGP
SGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCVGYNVGEGGIGGDTSDRHNLPLVQLPP
NTYQNYDEVEEEDPYRYGEGGYPSEYYQPNYPAPRPVVPEDPGLTQGDEVLRSPGIHRSY
RSLADKNDKKEEEGPGERKMVVP
NT seq
5652 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctataggactgaagacgtgggtatggagtcctctactctgtctggttcttatc
tctctcttacctgtgcaagctcagggtcaagttgccaccccacgaagacttcgtttcaaa
gtcctgagcgcaacccagctgcatgtgtcatggaaagaaccgaaaggagaatttgaaagc
tacagatttatttatagcacacagtcagatgcagaggagactgaactagagatgacaaaa
aaggaagccaaagtgatcatagactttgaccccagaatgttgtacacagtcaaggtcact
gctgtgaaaggtgctcaggagagcaagccacttcaaggaacatttaagaagcctgacaat
gagaacgtacagccccagaatgtacgacccaaaaaccagaaagacaccagtgtcactgag
gagaacaatgagatatctgaagagcagttcatgtgtaagaccccggccattgcagatatt
gtgatcctggtggacggatcatggagtatcggacggataaacttccgtctggtccgcatg
ttcctggagaatctggttagcgccttccatgtggagtttgacaagacacggataggtctg
gctcagtacagtggtgaccccaggatggagtggcacctgaacactttcaccaccaaagaa
gcagtcatcgacgctgtgaagaacctgccctacaaaggagggaacacactgacgggtctt
gcattgacgtacatcctggagaacagttataaacctgagtccggatccagggccggcgtt
cccaaaattggaatcctgatcacagatgggaagtctcaagacgatgtcaaacccccggct
cagagtctgagagaggcgggaatagagctgtttgccattggtgtgaagaacgccgatgag
aaagagctgaaggccatcggctcgcctccagaggagacgcatgtctacaacgtggccgac
ttcagcgtcatgagctctatcgtggagcgtctgaccaggaccgtctgtgaccgggtcgaa
cagctcgacaaggccatcaaaggcgacagaggcccagaagtcaccatgacctctcccaga
ggcctggtgacctcagaggtgacagccaggagtttccgggtgtcgtggacccacgcccca
gggacggtggagaagtaccgggtggtgtactaccctaccagcgggggccagcccgaggag
aaggtagtgcagggcacagtggacacagtggtgctcaactacctcctctccctgactgag
taccaggtgtccgtgttcgccatctacgccagctcagctagcgaggccctccgaggcagc
gctaccacattggccctgcccacggtgaacaacctggagctgtttgacatcacccacaac
accatgagggcccgctggagggtcgcagagggggcttctggcttcatgatcctctatgcc
ccgctgaccgagggagacgacgccgatgagaaggaggtgaaagtggctgagacggtgaac
gaagtggaactggagaacctgaccccagacacagagtacacagtgacggtgtacgccatg
tacggagaggaggccagtgaccctatgaccagtcaggagaccacgctacccctgaccccg
gcgcggaacctgcgcttctccaacgtcgaccacagctctgccagactcacctgggaggcg
acgtccaagaaggccagcggttaccgcatcatgtacgtcaagaccaatggagtgcaaacc
aatgagatggacgttggccgtatcaccaccctgttgctaaggaacctgacgtcattgacc
gagtacacggtggccatctttgctatctatgacgagggccaggcagagcccttgactgac
agcttcactactaagacggtcccagagcctctgaacctgaggagcagtgaagtctccaca
gaaagcttcagggtcacctgggaacactcagcccaagatgtggttctttacagactcaca
tggacccccatcagaggaggagacactaaagagatgctagtgaacggtaaaatgaatagc
cacctgctgactggactgaggcccattactgagtacgaggtctctctgattgctgtcttc
agaaacgaggaagcaagcaacgccgtgaccctcacagagtcaacagtggcaagaacaacg
actaccacaaaagctacaactaccacaactaccacacacgctaccaccacagcagttgtg
catctgggtgtgaggaacctcctgctcagcgatcacaccaccttcagcatggaggtgtcc
tgggagcagcaggaccgcaacgtgcgtcagtaccgcgtcgcctatgtcaccgccaggggc
gatcgtgccgaggagacgaaaatggtcccaggtggtcagaacagcctcctgctgcagcca
ctgctgtctgacatggagtacaaggtgacggtcaccccggtctacgccgacggagacggc
cccggtgttagccgcatgggacgcaccttgccactgtctgctcctaggaacctgagagtg
tcggaggaatggtacaaccgcttccgtatcacctgggacacgcccccatcccccactatg
ggctatagagtcgtctacaaacccatctctgctccgggacctgctttggagacctttgtg
ggcgaggacgtgaacaccatgctgatcctgaacctgatgagcggtactgagtacggcgtc
agggtcatcgcctcctacactaccggctccagcgagaccctcaccggcaaggccaggaca
ttgtaccttggagtgaccaatctgaacacctaccaggtgaggatgaccagcgtgtgtgcc
cagtggggtgcccaccgccacgccactctgtaccgtgtggtcatcgagtcgctgctcaat
ggatataagcaggaggcaaaactgggaggaggaaccacccggcactgcttcaatgacctg
acagctaacacgcagtacaagatcagtgtgtacgcccaactccaggatacagagggacct
gcagtctccaccacagagaagaccttccctgttcccaccccggcacccaccagaccaccc
accacgaccgctcctcccagtataccctcagtcaaggaagtttgcaaggcggccaaggca
gacctggcatttctagtggacggctcctggagcatcggtgatgacaacttcctgaaaatc
atccgcttcctgcacagcacaacaggagccctcgacatcattggaccagatggtactcag
gtggccattgtccagttcagtgacgatgccagaaccgagttcaaacttaactcgtacgac
aataaggagaggctgctagaggccattaaccgcatctcctataagggagggaacaccaag
acagggctagccatccggcatgtgaaagacaccatcttcacagtgggaggaggtatccgg
aggggcatccccaaagtactggtggtgttgactgacgggcgctctcaggacgatgtcaac
aaggtctccaaagagatgcagatggaagggtacattgtttttgccattggttttgcggat
gcggactacggggagctggtgagcatcgccagcaagcctagcgagagacacgttttcttt
gtggatgatttagacgccttcaagaaaattgaggaaaagctggtcacttttgtttgtgag
gctgccactgccacttgtccttcggtggcgatgagtggcagtaccttgccaggtttcagg
atgatggagatgtttggcctggtggagggtctgtatggacatgtatcaggagtgtccatg
gagcctggcaccttcaacagcttcccctgcttccgcctgcacaacaactccctccttgcc
cagcccactaagtttatccaccccgagggtttgccctctgattacaccatcactatgctg
ttccgcctgctgcctgaaacgcccaaggagccctttgcattgtgggagatcctcaacaag
gacaacgagcccctggtgggcgtcatcctggacaacagtggcaagaccctcatcttcttc
aaccatgactacaaaggacagtttcagactgtgaccttcgagggacctgagatcaagaag
ctcttctacggcagtttccacaagctgcacatggctattagcaagaccagcgccaaggct
gtcattgactgtaagctagtaggggagaaggccatcaacgcggcgggcaacatcaccacg
gatggcctggaggtgctgggacgcatggtgcgctccagggggaagaaggacagctctgca
ccgttccaactgcagtcgtttgacatcgtctgcagcacgtcctgggccagccgagacaag
tgctgtgagcttcctggtttgaggaaggaggaggactgtcctgccatgccgagggcctgc
acctgcagccaggaaagcaaaggtccccctggccccactggaccccctggaggacctggg
atcagaggagggagaggggaccgtggagaaccaggagctgtgggaccgataggtccagtt
ggggacgctggttctcctgggctgcaggggcctcgtggaccccaggggcccggcggacgt
accatcatgggccctccgggtggtccaggagaaagaggtgagaagggtgcagctggcgct
ccaggaatacagggcattcctggatctcctgggccatcaggtcgagcgggacaaacagga
acaaggggacttcctggtaaagatggaccccaggggcgaacaggacctccagggactata
ggcactccaggagctcctgggtcaccagggtcaagtggacctccagggtcactgggaaac
cagggacctcctggtcccgccggaaacaaaggagagaagggagaaagaggtgacctgcaa
tcccaggcatcggtccaagcaatcgcccgccaggtctgtgagcaactgatacagagtcac
atggctcgctacagctccatccttaaccacatcccgagcgcacccgtctccgtccgcacc
gttccaggtcccccaggagagcccgggcggcagggcggcccaggaccacagggagagcag
gggcccccgggcagaccagggttccccgggtccaatggagaaaatggacaagcaggagcc
agaggtttgtcaggagagaagggtgacaagggaagcccaggcgcaggagtccagggtccc
agaggccctgtcgggcccccaggaccaacgggtcagggccggacaggaagccagggtcca
tctggtcggccagggaaccctggaacccctgggcggccgggtatccctggaccagtgggg
tcggctggacctcctggatactgtgaccagaactcctgtgtgggctacaacgtaggagag
ggtggcatcggtggtgacacatctgaccgccacaatcttcccttagtccaattgcccccc
aacacctaccagaactatgacgaggtggaggaggaggacccctataggtatggcgagggg
ggctacccctccgagtactatcagcccaactacccggcgcctcgaccggtcgtgcccgag
gacccaggcctcacccagggcgacgaggtgctgaggtcccccgggatccaccgctcctac
aggagcctggctgacaagaatgataagaaagaagaagaggggccgggggagaggaagatg
gttgtcccatga
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