KEGG   Oncorhynchus mykiss (rainbow trout): 110489537
Entry
110489537         CDS       T07259                                 
Name
(RefSeq) WD and tetratricopeptide repeats protein 1 isoform X1
  KO
K11807  WD and tetratricopeptide repeats protein 1
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:omy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:omy04121]
    110489537
Ubiquitin system [BR:omy04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     110489537
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd EIF3I WDR55 Beta-prop_EML WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd TPR_19 WD40_RFWD3 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N TPR_2 Beta-prop_HPS5 Beta-prop_RIG_2nd Beta-prop_WDR19_1st ANAPC3 Beta-prop_EIPR1 Beta-prop_SPT8 TPR_17 TPR_1 Beta-prop_SCAP Barstar TPR_16 TPR_6 Beta-prop_IFT140_1st TPR_9
Other DBs
NCBI-GeneID: 110489537
NCBI-ProteinID: XP_021417936
Ensembl: ENSOMYG00000035008
UniProt: A0A8C7W5Y9
LinkDB
Position
2:39500145..39520622
AA seq 676 aa
MTCCEAMSAVNITRDILHRQIRDKRALGFQRQYHVTDPFISRLGLEAELQGHTGCVNCLE
WNEQGDLLASGSDDQHCIIWDPFKHKKLTTMHTGHAANIFSVKFLPHSGDRILVTGAADT
KVHVHDVSVKETIHMFSDHTNRVKRIATAPMWPNTFWSAAEDGIIRQYDLRESSKRSEVL
IDLTEYCGQLVEAKCLAVNPQNNNYLAVGANGPFVRLYDMRMIHNHRKSASQSTSAGVHT
FCDRQKPIPDGAGQYYVAGHLPVKLPDYNNRLRVLVATYVTFSPDGTELLVNMGGEQVYL
FDLTFKQKPYTYLLPKKCQLTDVQNGKTTNGVSNGIHLPASRLRFAESKVFSGSGELPLH
LERIKLQANDAFARQQWTQAIQFYSLGIHEASHNAMLYGNRAAAYMKRKWDGDHYDALRD
CLKALSLNPGHLKAHFRLARCLFELKYVAEALDCLDDFKGKFPEQAHSCACDALDKDIKA
ALFSKMDSAGDKKGNSSIRFHTFSRKESIPEDEVVLRERSYDYKHRYCGHCNTTTDIKEA
NFFGSKGQYIVSGSDDGSFFIWEKETANLVRILQGDESIVNCLQPHPSYCFLATSGIDPV
VRLWNPRPETESESGNGRVVEDMEGAAAANQRRMNADPLEVMLLNMGYRITGLSGRGPEG
SDDEDSSDGQVQCRPS
NT seq 2031 nt   +upstreamnt  +downstreamnt
atgacttgctgtgaggccatgtctgctgtgaacatcaccagagatatcctgcacaggcag
atcagggacaagagagcattgggcttccaaaggcagtatcatgtcacagaccccttcatc
agtagacttggactggaggcagagttgcagggccacactgggtgtgtgaactgcctagaa
tggaacgaacagggagatctgctggcatcgggctcagatgaccaacattgcatcatctgg
gaccccttcaaacacaagaagctcaccactatgcacacagggcatgcagcaaacatcttc
tctgtgaagtttctccctcactcaggtgaccgtatcctcgtgacaggtgcagcggacacc
aaggttcacgtgcacgacgtgtcggtcaaggagaccatccacatgttctccgaccacacc
aaccgcgtcaagcgcattgctacagcccccatgtggcctaacaccttctggagtgctgcg
gaggacggcatcatcaggcagtatgacctgagggagagcagtaagcgttcagaagtgctc
atcgacctgacggaatactgtggtcagctggtggaggccaagtgtttggctgtcaacccg
caaaataataactacctagcagtgggggccaacgggccctttgtacgcctctacgacatg
cgcatgatccacaaccacaggaagtctgcgagtcagagcacatcggcaggagtgcacaca
ttctgcgacagacagaagcccatcccagacggagcggggcagtattatgttgcagggcac
ctgccagtgaagctccctgactacaataaccgcctgagggtcctagtggccacctacgtc
accttcagccccgacggcaccgagctgctagttaacatgggaggagaacaggtgtatcta
tttgacttgacgttcaaacagaagccgtacacctatctgcttcccaaaaagtgccaatta
acagatgttcagaatggaaagacaaccaacggtgtgtcaaatggaattcacttgccagcc
agccgacttcgattcgcagaaagcaaagttttctctggttctggcgagctgcctcttcac
ttggagcggataaagctacaggccaacgacgcgtttgcgcggcagcagtggacgcaggcc
atccagttctacagtctgggcatccacgaggccagccacaacgccatgctgtacgggaac
cgcgccgccgcctacatgaagcgcaagtgggacggtgaccactatgatgcgctgagggat
tgtctgaaagcactgtccctcaaccctgggcacctgaaggcccacttccggctggcacgc
tgcctctttgagctgaagtatgtggccgaggctctggactgcttggatgacttcaagggc
aagttccccgagcaagcccacagctgcgcctgcgacgccctagataaggatatcaaggcc
gccctcttttccaagatggactctgctggggacaaaaagggcaacagctcaatccgcttc
cacacgttcagcaggaaggagtccatcccggaagacgaggtcgtcttgagagagcgcagc
tacgactacaaacaccgctactgtggtcattgtaacaccaccacagacatcaaggaggcc
aacttctttggcagtaaaggccagtacattgtgagcggctccgacgacggctcctttttc
atctgggagaaggagactgctaacctggtgcggatcctccagggggacgagtccatagtc
aactgcctgcagcctcaccccagttactgcttcctggctaccagcggcatcgaccctgtg
gtgcggctctggaaccccaggccggagacggagagtgagagtgggaacggtcgcgtggtg
gaggacatggagggtgccgctgcagccaaccagcggcgtatgaatgccgatcccctggag
gtcatgctgctcaacatgggttaccgcatcacgggcctcagcggccgcgggccagagggc
tcagacgatgaggacagctcagatggccaggtgcagtgccggcccagctag

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