Oncorhynchus mykiss (rainbow trout): 110489660
Help
Entry
110489660 CDS
T07259
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit pan3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110489660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110489660
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110489660
mRNA degradation factors
3'-5' decay
Pan complex
110489660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Torus
Pkinase
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
110489660
NCBI-ProteinID:
XP_036799729
Ensembl:
ENSOMYG00000011351
LinkDB
All DBs
Position
15:15166247..15193050
Genome browser
AA seq
827 aa
AA seq
DB search
MNSGLPASAAPLGGVGIPCVKVKFCRYYAKDKTCFYGDECQFLHEEPSMASMSLHSGASP
VPLSMSGGAVTYPLSAPPACPVGVPNVPKKGDSLGPAGTVLEGQMLTIPGMEGGTLSDAN
LTNSYFSSSFIGVNGFGSPAESKYSIMQRITNSSSSPSLLDDGAKNFSHSAHDLFHGTLA
AGPGQSCGSMENSPWTTQSSFPLPLCPLPDPGNSPMSSLFSDFGALSISQRRKGPNPTAN
EFIPKGVPRMATMVQSSGPAFPSPLFPHLGLSSSTALAPGMSLSAGSTPLHSPKITPQTS
PAPRRRSHTPNPNNPNPANYMVSTSVSDQGAHIIQKETVGGTTYFYTDNTPAPMAGMVFP
TYHIYPPTAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQLDQSENTGVPSEVDSY
HSLFPLEPVPPPNRLQKTSNFSYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMMLVDM
WKKIQHSNAVTLREVFTTKAFGDHSLVFSYDFHAGAETMFSRHFNDPAADSYFTKRKWGQ
HEPTPPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPSKILITGKTRLRVNCV
GVFDVLTFDNSQTNHVTLMPQYQQADLISLGKVVLALACNSLAGIQRENLQKAMELVSIN
YSSDLKNLILYLLTEQSRLRSVNDIMPMIGARFYTQLDASQMRNDVIEEDLAKEVQNGRL
FRLLAKLGTINERPEFQKDHTWSETGDRYLLKLFRDHLFHQVTEAGTPWIDLSHIVSCLN
KLDAGVPEKISLVSRDEKSVLVVTYSDLKRCFDNTFQELQQAAVGPL
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggactcccagcttcagctgctccactcgggggtgtcggaataccctgcgtc
aaggtgaagttctgccgatactacgcaaaggataagacttgcttttatggggacgagtgt
cagtttttgcatgaggagccgtctatggcaagcatgtcccttcacagtggagcaagtcct
gtccctttatccatgtctggaggagccgtgacgtatccgcttagtgcacccccggcctgc
ccggttggggtaccgaacgtccccaaaaagggcgactctctggggcctgcaggcacggtt
ctggagggacagatgttaaccatccctgggatggagggcgggaccctgagcgatgccaat
ctgaccaactcctacttcagcagcagcttcattggggtcaacggcttcgggagcccggca
gagtctaaatactctatcatgcagagaatcaccaacagcagcagttctcccagtctcctt
gacgacggtgccaagaacttcagccacagcgctcacgatctattccatggaaccctggca
gctggaccaggtcagagttgtgggtcgatggaaaactctccgtggacaacacagtcttca
ttccctctccctctatgtcctcttccagatccagggaattcccccatgtcttcactcttc
agtgactttggtgctctgagcatatcacaaaggagaaagggtcctaaccctacagccaat
gagttcatccctaagggggttccccgcatggccactatggtccagtccagtggtccggcc
ttcccatcgcccctcttcccccacctcggcctcagcagctccaccgccctcgcacctggg
atgtctctctctgcggggtccacccccctccactcccctaaaatcaccccccaaacctca
cctgcccctcgccggcgtagccacacccccaaccccaataaccccaacccagccaactac
atggtgtccaccagtgtgtctgaccagggggctcacatcatccagaaggagacggtgggg
gggaccacctatttctacacggataacacccccgctcccatggccgggatggtgtttcct
acctaccacatctacccccccactgctccccacgtggcctacatgcagcccaaagccaac
gccccgtccttcttcatggctgatgagctccgacaggagctgattaacagacatctgatt
accatggctcagcttgaccagtcagagaacacaggtgttccatctgaggtggatagctac
cacagcctgtttcccctggagcctgtcccccctcccaaccgcctgcagaagaccagcaac
ttcagctatatcacttcctgctacaaggctgtcaacagcaaggacgacctaccgtactgc
ctgaggaggatacacggtttcaggctggtgaacaccaagtgtatgatgctggtggacatg
tggaagaagatccagcactccaacgctgttaccctgagggaggtcttcaccaccaaggcc
tttggagatcactcgttggtgttctcctatgacttccatgcgggggcagagaccatgttc
agccggcacttcaacgaccccgcggccgactcctacttcaccaagaggaagtggggacag
cacgagcccactccaccgcggcagcacgcaggtctgctcccagagtctctgatctgggcc
tacatcgtccagctgagctcagccctcagaactatccacactgctggtctggcctgtagg
gtcatggaccccagcaagatcctcatcaccggcaagaccaggttacgagtgaactgtgta
ggggtgtttgatgtcttaacgtttgacaacagtcagaccaaccatgtgaccctcatgcca
cagtaccagcaagcggacctgatatccctgggcaaggtggtgttggccctggcatgtaac
tctctggctggcattcagagagagaacctgcagaaggccatggagttggtgtctatcaac
tactcatcagacctcaagaacctcatcctgtatctgttgacagagcagtctaggctgcgc
agcgttaatgacatcatgcccatgattggagctcgcttctacacacagctggatgcatca
cagatgaggaatgatgtcatcgaggaggacctggcgaaggaggtccagaatggtcgtctc
ttccgtctgttggccaaactgggcaccatcaacgagagaccagagtttcagaaggaccat
acgtggtctgagacgggggaccggtacctgctgaagctgttcagagaccacctcttccac
caggtgacagaggctggaaccccctggatagacctcagccacattgtttcctgcctcaac
aaactggacgcgggtgtgcctgagaagatcagcttagtgtctcgggatgagaagagtgtt
ctggtggtgacctactcggacctgaagcgctgtttcgacaatacctttcaggagctgcag
caggccgctgtcggaccgctgtag
DBGET
integrated database retrieval system
