Oncorhynchus mykiss (rainbow trout): 110489836
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Entry
110489836 CDS
T07259
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03018
RNA degradation
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110489836
09123 Folding, sorting and degradation
03018 RNA degradation
110489836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110489836
03041 Spliceosome [BR:
omy03041
]
110489836
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110489836
mRNA degradation factors
5'-3' decay
Lsm complex
110489836
Spliceosome [BR:
omy03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110489836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
110489836
NCBI-ProteinID:
XP_021418454
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All DBs
Position
15:23439842..23445587
Genome browser
AA seq
91 aa
AA seq
DB search
MAATPATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaccccagctacaaatccatcacagttgctcccacttgagctcgtggacaaa
tgtataggttcccgaatccatatagtcatgaaaaacgacaaagaaattgtcggcaccctg
ttgggtttcgatgattttgtcaacatggtgttggaggacgtgacagaatttgaaatcaca
ccggagggaagaaggataaccaaactggaccagatcctactcaacggcaacaacatcacc
atgctcatacctggaggcgaagggcctgaagtatga
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