Oncorhynchus mykiss (rainbow trout): 110489895
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Entry
110489895 CDS
T07259
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110489895 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
omy03032
]
110489895 (topbp1)
03400 DNA repair and recombination proteins [BR:
omy03400
]
110489895 (topbp1)
DNA replication proteins [BR:
omy03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
110489895 (topbp1)
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
110489895 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
110489895
NCBI-ProteinID:
XP_021418536
Ensembl:
ENSOMYG00000013261
UniProt:
A0A8C7PWG5
LinkDB
All DBs
Position
15:26811022..26849032
Genome browser
AA seq
1533 aa
AA seq
DB search
MSKGDRDGFVVKFVEVNGRKTDLAVKAYEAIMALQSESYLKNIDEETALQMDRNDKSLFV
FSTFSTPAFHHCTKLGCRVVSPLVVLFCLQQQRCVPKAEQPVYNMAMADVTISCTSLDKE
ARADVMDLVQLMGGRVYRDLNVSVTHLVAGEVGSKKYLVAASMGKPILLPAWVKTCWEKS
QDSLFRYTDLPIEDYLCPVLCGCTVCVTGLSTVERKKVQRLCQLHGASYTGQLKMNECTH
LIVSEPSGQKYECAQKWNVFCVSLHWLFDSIEKGFCQDESRYTVERGDQKDGKPHTSTPT
GTSKKKEDSASLLGLSHISVNSSMTVNDTALTNATLSRLDTPDPIDALDITVGPAEDLLD
GCKLYLCGLPGMRLEKLRRLVNMAGGLHFNQPSEELTHVVMGDTDQETKTFLAKATHRPH
VVTVQWLLDSFSRGSLLSEGDYHHPACLPPAPSTVAMPAPRTSASRPSSTISAAPLAHEP
ATPRHRKAEEDMLSQYMDDDQTVVEMPLPADSSIHRRQSSIAPEPWVSAPGQASTIAEVG
AGADTTLQEASEAGLFAGKRFLLVGFGAEAEAQLSMLVTENCGKVLVGRTRAVADYAVVP
LLGCEVEATVDEVATDTWLAMCVEQQCVLELGSHPLFSPVSVMEGRSPLRDCVLSVSQFT
GAERESLVELAKHLGASVQDYFVRMANQRRGMLASTHLVLQSPEGTKYQAAEKWGLPAVT
LRWVLESARTGRKAEEGRYLVDLPRSPEREEESFVGGSQKQSMPPPPARNKSPEIPLLGP
QSGAAVTPLDTRRFQSKVFRSVLDQGQQDKDCTTPGGQEGDRKAGGQKESPALPLDTPSR
FLCRDQLFRPTFNVKAALAALDTPGGRSQQSQKVVTPLSEVIGRNLKVALANSTRSNDPD
LQALSASPQLSKETHRVVEEEAAALTGVVICVSKKLSKKQRELNGIAASLGADFRWSCDD
TVTHYIYQGRVGDNTREYRALKERGVHVVSQHWLQACAEDQRHVSESLYPFTYNPKMSLN
LSQVPPDSSQRSPPATRTTKLRDLTEAQENRPEDNAVEDATTSHHVSGETDQEQGRDNAE
KEDLSETLEMREKLQRQLQEIMSATKKTTSRRSSARLGSGGTDSHPHTPGRNANARRTLE
ALRMSRQAAMDLNTEPSQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSESLAVPLAAP
LSHSDNAGNTLRDSMTDSEMVEMVVCDVIDQQMGERVMTVPGEEPDHLTPKAPSIAFPLA
NPPVPPEPQMDEESEAEKEPPRFQLSSLNPQERIDYSALIEELGGVVLDKQCFDPSCSHI
IVGSPLRNEKYLAAMASGKWILHRSYLEACRSVGHFIQEDAYEWGSSSILDALPSISSHQ
KRLALAAMRWRRNLQDQNNLEGAFSGWTVMLNIDQTRESGFRRLLQSGGAKVLPSPSPSL
YKGTTHLFAEFSRLKPGDFRVDVPEAMSQGVKCLKPEFIADYLIQEPSAPIEMYYLPQAA
QCLPVGADVSRTTPSYKRKVSGDSSKLKKTRLK
NT seq
4602 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaggagatcgagatggcttcgttgtgaagtttgtagaagtcaatggacgaaag
acagaccttgctgtcaaggcctatgaggccataatggcgctccagtcagagagttatttg
aagaacattgatgaggagactgcattacagatggaccgtaatgacaagtctctatttgtc
ttcagtaccttttccactccagccttccaccactgcacaaagctgggctgtcgagtggtg
agtccactagtggtgctcttctgcctgcagcagcagcgctgtgttcccaaagcagagcag
cctgtctacaacatggccatggctgatgttaccatctcctgcaccagtctggacaaggag
gctagggctgacgtgatggatctggtacagctgatgggagggcgggtctatcgggacctt
aacgtgtctgtcactcacctagttgccggggaggtgggcagcaagaagtacctggtggcc
gccagcatggggaagcccatcttgcttcccgcctgggtcaaaacctgctgggagaaatca
caggacagcctgttcagatacactgacctgcccatagaggactacttgtgccctgtgctc
tgtggctgcaccgtctgtgtcacaggcctctccacggtggagcgtaagaaggtgcagagg
ctctgccagctgcacggggccagctacactggacagctcaagatgaacgagtgcacccac
ctcatcgtcagcgagccctcaggtcagaagtatgagtgtgcacagaagtggaatgtcttc
tgtgtgtctctgcactggctgtttgacagcatcgagaagggcttctgccaggacgagagt
cgctacacagtggagcgaggggatcagaaagacggcaaaccccacacctccaccccgacc
gggaccagcaagaagaaagaggacagtgcgtctctactgggcttgagccacatttctgtg
aacagcagcatgacggtgaatgacacggccttgaccaatgccacgctcagccggctggac
acaccagaccctatcgacgctctggacatcacagtcggccccgcagaagacttgctggac
ggctgcaagctgtacctgtgtgggctgccagggatgaggctggagaagctgcgtcgcctg
gtcaacatggccgggggcctgcacttcaaccagcccagcgaggagctcacccacgtggtc
atgggagatactgaccaggaaaccaagaccttcctggccaaagccacacacaggccccat
gtcgtgacggtgcagtggctgttggacagcttctccagaggcagcctgctctctgagggg
gactaccaccacccggcttgtctgccccccgccccttcaaccgtggccatgcctgccccc
cgcacctccgcttctcgtccatcctccaccatctcggctgcaccccttgcccatgaacca
gctacccctcgacacaggaaggccgaggaggacatgctctctcagtacatggatgacgac
cagacagtggtggagatgcctctaccagctgacagcagcatccacaggaggcagagctct
atagcaccagagccctgggtctcagccccaggccaggcttctactatagccgaagttggg
gccggagctgacaccaccctgcaggaggccagtgaggcgggcctatttgcggggaaacgc
ttcctcctggtgggctttggggcagaggcggaggcccagctctccatgctggtgacggag
aactgtgggaaggtcctggtggggcgcacccgcgccgtggctgactacgctgtggtaccc
ctgctgggctgcgaggtggaggccactgtggacgaggtggccactgatacctggctggcc
atgtgtgtggagcagcagtgtgtgttagagctgggctcccaccccttgttcagccctgtg
tcagtgatggagggccgctcccctctcagagactgtgtcctctcagtcagccagttcacc
ggggcagagagggagtccctggtagagctagccaaacacctgggagccagtgtccaggac
tactttgtgcgcatggccaatcagaggaggggcatgctggctagtacccacctggttctg
cagagcccagagggcaccaagtaccaggcggccgaaaagtgggggctaccggccgtcacc
ctgcgctgggtgctggagtctgccaggacgggccggaaggcagaagaggggcgatacctg
gtggatttgccccgttctccagagagagaagaggagagttttgtggggggttcgcagaag
caatccatgccccctcccccagcccgtaacaagtccccagagattcccctgctgggcccc
cagagcggggcggccgtcacccccctggacacgcgccgtttccagagtaaggtgttccgc
tccgtgctggaccagggccagcaagacaaggactgtaccacaccgggaggtcaagagggg
gacaggaaagcaggggggcagaaagaatccccagcgctgccgttggacaccccctcccgt
ttcctctgccgagaccagctcttcagacccaccttcaatgtcaaggctgcgttagcagcg
ttggacacaccagggggcaggtcacagcagagtcagaaggtcgtgaccccgctgtccgag
gtcatcgggaggaacctgaaggtggccctggccaacagcacccgcagcaacgaccctgac
ctccaggccctctcagccagcccccagctcagcaaggagacacacagagtggtggaggag
gaggctgctgccctgactggtgtggtgatctgtgtgagtaagaaactgagcaagaagcag
cgggagctcaacggcatcgctgcctcattgggagctgacttcaggtggtcgtgtgacgac
accgtgacgcactacatctaccagggtcgtgtgggggacaacacgcgggagtacagggct
ttgaaggagagaggggtgcatgttgtgtcccagcactggcttcaggcgtgtgctgaggat
cagaggcacgtgtcggagtctctctacccgttcacctacaaccccaagatgagcctgaac
ctcagccaggtgcctcctgacagtagccagaggtcaccccctgccacccgcaccacaaaa
ctcagagacctcactgaggcccaagagaacaggcctgaagataatgccgtagaagacgcc
acaacctcccatcacgtcagtggagagactgatcaagagcagggccgggacaatgcagag
aaggaagacctgtcagagaccctggagatgagggagaagctccagaggcagctgcaggag
atcatgtcagccaccaagaagaccaccagcaggcgctcttcagcccgcctgggctccggg
gggactgactctcatccccatacccctggccgcaacgcaaacgcccgacgcactctggaa
gcactgcggatgtctcgtcaggcagcaatggacctgaacacagagccgtctcagagtgag
cagatcgtgtgggatgacccaacggcccgggaggagagggccaagctggctgacaacctg
caatggcctggcagcccctcccagcactctgagtccctggctgtacctctagcagcaccc
ctatcccactctgacaatgccggaaacacactccgggactccatgaccgactctgaaatg
gtggaaatggtggtgtgtgacgtgattgaccagcagatgggtgagagagtgatgactgtg
ccaggggaggagcctgaccacctcacccctaaagcccccagcatcgccttccccctcgcc
aacccccccgttcccccagagccacagatggatgaggagagtgaggcggagaaggagcct
cctcggttccagctctcctccctcaacccccaggagaggatagactacagcgccctcata
gaggagctggggggcgtggtgctggacaaacagtgctttgaccccagctgttcccacatc
atcgtggggagccccctgaggaatgagaagtacctggcagccatggcctctgggaagtgg
atcctgcaccgttcctacctggaggcctgtcgctccgtgggacactttatccaggaggat
gcgtacgagtggggcagtagctccatcctggatgccctaccctccatcagctcccatcag
aagaggctggcattggctgccatgcgctggaggaggaacctgcaggaccaaaacaacctg
gagggagcgttcagcggttggaccgtcatgctaaacatcgaccagaccagagagtcaggg
ttcagacgactactgcagtctggtggagcaaaggttctccccagtccctctccatctctg
tacaagggaaccacgcacctgtttgcagaattcagccggttgaagccaggagacttccgg
gtggatgtgccagaagccatgtcccagggagtcaaatgtctgaagccagagttcatcgca
gattacctcattcaggagccgtctgcaccaatagagatgtactatcttcctcaagcggcc
cagtgtctgccagtgggcgcagacgtcagccgcaccaccccgtcctacaagcgcaaagta
tcaggagattcctccaagctcaagaagacccgcctcaagtga
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integrated database retrieval system
