Oncorhynchus mykiss (rainbow trout): 110490044
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Entry
110490044 CDS
T07259
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03440
Homologous recombination
omy03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110490044 (brca2)
03460 Fanconi anemia pathway
110490044 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
omy04121
]
110490044 (brca2)
03036 Chromosome and associated proteins [BR:
omy03036
]
110490044 (brca2)
03400 DNA repair and recombination proteins [BR:
omy03400
]
110490044 (brca2)
Ubiquitin system [BR:
omy04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
110490044 (brca2)
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
110490044 (brca2)
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
110490044 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
110490044 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA-2_OB3
BRCA2
BRCA-2_OB1
BRCA2DBD_OB2
Tower
BRCA2_TR2
Motif
Other DBs
NCBI-GeneID:
110490044
NCBI-ProteinID:
XP_021418819
Ensembl:
ENSOMYG00000043819
LinkDB
All DBs
Position
15:39547344..39589108
Genome browser
AA seq
2855 aa
AA seq
DB search
MDIRRNMFDAFKDQIWEELGPLNPNWFEELTAKASSRDWGDTEKDNPSTAISCGQDGSFK
TPLGKCPLDGDMFSTPKIFRQRRPQSPETLIEDAVFFPDQGTSATEKMDTSPCLFGKSID
SRTPSKSYRTRLHGDSFGLLDTPKHSTIFLFQQAHSAKRTSESLGAQLDPDMSWTSSLNT
PVMSPTIILTKSEEHSPMCPVRIATDEQVMFVRKLFPSAKESRSTMLSPEQNDRPLCQHN
GLDSHLPGVIDISPGFQDTLPGDSGSHWKQTLPDAIEDGEICSTMTGVLDGAEDVLSIFF
SNKSLALQRVKTNERIKRKQSGATKKHVPTSTTEHDKVSSGRAGEYQHTRETSEPLESRT
DMKSGDLATSQWTPINVPNFLGYDMDSFHHEGSSSTKHIIPQGGKSETFRDFTGSQQPDR
GSSKHTVQVESALSRRRLPCTSQPEGSQLTGSVVESSLEHTFPRKTRTFVYCVQNPLLSV
QEKYVTQMLPASPGTAPRGENQNMKQSKTIPDEAEFNNLNKTALDGKKPLVQKSATEENI
VSQAPTKDPDLDMSQLCRVFAQDFSQVIDYSQPCSKRADAIKNGFSVSACLPAMRLRNRK
LLNRLEWGQKPEHLNSGISDEMHIPGSQFSNSANTSRMKSTVCDSGFPPSTLSDVTQTES
SIHPSSEKSYGNQSSRGFKTGNNWIISLPPEAIKKAKASLDDLIEENMTDVVTAASEVKP
VLSCVTGSRLSTEVKFISPLNIAKRSKQTSVKLNGQVHVPTHQSNVSVSSHPGSGFKMAS
NKKIRFFSANLEKDEDLFKEIEDEIPAVNIPEISLPEEGNMSCGLELVDGSHLPPLLYTH
QRSVNSQGPLTASQRADVSELCNLLEAADSQFEFTQFKPAKLNFYVPDGSPPHQSEKELD
PDFLTGIDFDDSFNSDVEKQSVKMVTPDKKTTISHCKEICQVTTTKIKSSGASSSNSTEK
SKEHVIHRRVLYIPSYSSENIAEHSFGLLTKSTNKNHLLDMDTNTSGMECERKKLDVGFK
TAGGNAMIVSEKCLSKARALFADFEEKNCAPKCAVKNTEQVEISPVQYRGEVDTHVDSNV
THFHGPENKVDLKEPHDEYIDKIKVDFTHSHTHGDGGFQTASGKGVTISAKALQNTNAVF
KDCDAMESSGCASEKLSKTSVVSETGSNNFERNNCGFSTARGKRLDVSAKSLLTLLNDCD
ELENSKPGKIPSLNAKIPSQNIQQKSDCDFKKPSIKAASISARIPFTAKTQFDSGMSHDV
LGAKSKMLEPENSQTHAKDPLKNGCGFSTASGKRVSVSEGALLKAQALLSECNVDGEELS
KSKKKIRVDLHNPTQKHSGCKTAGVKEVTVSPKAHKQAQALFNNCDFNMDSLISAEAKQG
NIDVKSADGLMNNPGKSYCAFMTAGGENVHVSEKGILKAKSILNENLDNCTDSNAIEEAW
FSDGRFLLLTEDGTGVKKGARNKSNDSDLNGDEKSCDFSTAGGKTVHMSDGALQKAKSIL
NECDVIENPQPENGHNVHLEKIPTKETHEISHGSAASGNGVFISEKALQHVKSVYVLGET
GNVKYSVGSNPVGSHFGFSTASGKGLSVSEKALQEACDDTLARDTDPHKRSEGNRPLKVP
SPHINVQRVPVKAVRLEDREVIQTIVGMEWKSSSVECQAEYSLLNFESLGFSGCSVTQRR
YFAQEAMDCTKALLEDEDLTDHCPGTPIQANPMSCKGGFEMRSGIGKRSAEDLGMTDQPP
LKRKLLTKFDRTVDCIRRSKLTPAKSSSDGIFKDRRVFKYNVALQPNVTRPYRAIQRCVD
TRLNKPEPQKTTSDPTAEDRKPVSSKTAVFVPPFRKNVKLEPQGSSGLQDKTRAPGVFVS
PFLKNNRLTREGSFKPSEDNHSPFISEMPTKTTSVPLPEYNPITDTGSDNAKESIKEQDP
QNIDKTDRGDDCGHCLPVTLGGEGATAEESIAGQLAPDATGTLLDVVYDAECLQLARDMQ
DMRIRKKKRQTIRPLPGSLYLAKTSGVSRLTLREAVGGWHPVQHTHKQLYGYGVHRHVWD
ISSESAEAFRFVCRHFFRREAFVEGCIQLADGGWLIPRNDGTAGKHEFHRALCDSPGVDP
KLISEDWVFNHYRWVVWKRACMERAFPEVMGSLCLTPEQVLLQLKYRYDLEVDNSKRSAL
RKIMERDDTAVKTLVLCVCGVVTKGHNPTRQSWSETKTKTPPGSAAGSKAKSSPVGLIWL
TDGWYAIKAQLDVPLTAMLHRGRLAIGGKVLVHGAELVGSQDACSPLEAPDSLMLKIGAN
GTRAARWYTRLGFYSNPSPFLLPLSSLYSNGGTVGCVDIVVLRSYPTQWMEKKSDGGFVF
RAGRAEEREARRHGNAKHRAMEILFAKIQAQFEKEEDVTKPFPPTEHHPTVCGKPRGRRR
TLRGRDIETLLDGEELYDAVENDPVYLEGRLSEEQREALNSYRRCVGERRQEALQERFRQ
ALESTQEGEGRSCHNRDVTPIWKLSIADSRAKPGSNAVYLLNIWRPSMDLQSLLKEGCRY
RAYQLSTSEGKKRAGNTSIQLTATKKTQFQNLQASAGWLSEIFQPREAVGFRVLLNLKPL
CGEVDLVGYVISITDRQGHSPVVYLVDGWLDFVEVRCCSSLVQQGLEEVVKPLALVALSN
LQLRAHPSSPTPIRSAIPGLYAGDLVSFSTNPKEPHLQEAAAQLRTLVQGQEHFFRTAEE
RLSNLIQVSVQCLPPLPWKADAKPDSRTTMKPQQSVRSVGPFTPLNSVVPPPPACFSGGD
NKDPKSLKRKRGLDYLCRIPSPPPLCPLGTMTLPSPCVNKTFNTPRRAETHRILKTPLAP
APQHVHLPLEDEWVEDEELFMIDTQALHDGIERDT
NT seq
8568 nt
NT seq
+upstream
nt +downstream
nt
atggacataaggagaaacatgtttgatgctttcaaggatcaaatatgggaagagttggga
cctctgaacccaaactggtttgaagagctcactgctaaagcttccagtcgggattggggt
gatacagagaaagataatcccagtactgcaatatcttgtggacaagatggtagtttcaaa
acaccattggggaaatgtccccttgatggtgatatgttctctaccccgaagattttcagg
caaagaagaccacagtctcctgagacattgatagaagatgcagtgttttttcctgatcaa
ggaacctctgcaactgaaaaaatggacacaagcccatgcttatttggaaaatcaatagac
agcaggacccccagtaaatcctatagaacaaggctgcatggagacagttttgggctgctt
gacacaccaaaacactctacgatctttttatttcagcaggcacactctgccaaacgtaca
tctgaaagtcttggtgcacagttagaccctgatatgtcctggaccagttctctcaataca
cctgtcatgtcgcccaccatcattttgactaaaagtgaggagcatagtcctatgtgccca
gtaagaattgctaccgatgagcaggttatgtttgtgcgaaagcttttcccttcggccaag
gagtctagaagcacaatgctgtcaccagaacagaatgatagacctctctgtcaacacaat
ggactagattcccacttgcctggtgtgattgacatctcccctggctttcaagacacgtta
cctggtgacagtggcagccattggaaacagactttaccagatgctattgaggacggagaa
atctgcagcacaatgaccggtgtcctagatggagccgaggatgtcctctccatattcttc
agcaacaaaagtttggctttacaacgggtgaagaccaacgagagaatcaaaaggaagcaa
agtggcgcaactaagaaacacgtacctacttctacaacggaacatgacaaagtatccagt
gggagagcaggagaataccaacacaccagggaaacatctgagcctcttgagtccaggact
gacatgaagtctggggatttggcgacttctcagtggactccaataaatgtacctaacttt
ttaggctatgatatggattcatttcaccatgaggggtcttcctctactaaacacataatt
ccacaaggtggcaaaagtgaaacattccgtgacttcactggaagccagcagccggatcgt
ggttcctctaagcacactgtccaggtggagtctgctctttccagaagaagattaccatgc
accagccagccagagggatctcaattgacagggtctgtagtcgaaagctctctagaacac
acatttcccaggaaaacaaggacatttgtttactgtgtccaaaatccacttctgtcagtg
caagagaaatatgttactcagatgttacctgcatcacctggaactgctcccagaggtgaa
aatcagaacatgaaacaaagtaaaaccataccagatgaagctgagtttaataatcttaac
aaaactgccttggatgggaaaaagccgctagttcagaaaagtgcaactgaagaaaatatt
gtttcacaagcaccaaccaaagaccctgatcttgatatgtcacagctttgcagggtattt
gcgcaagattttagccaagtaattgactacagtcaaccatgcagcaaaagagcagatgct
attaaaaatggcttctctgtatcagcttgtctcccagcaatgagactaaggaacagaaaa
ctgttgaatagactagaatggggtcagaaacctgaacatttgaactctggcatcagtgat
gaaatgcatattcctggttctcagtttagcaactctgcaaacacatctagaatgaagagt
acagtgtgtgatagcggcttccccccctccaccctttctgatgtcacacaaacagaatca
tccattcaccctagctctgaaaaaagttatggaaatcaatcatctagagggtttaaaacg
ggtaacaactggattatctctttgcctccagaagcaataaagaaagcaaaagcatcatta
gatgacttaattgaggaaaatatgactgatgttgttactgctgccagtgaagtgaaacct
gtgttgtcatgtgtgacaggaagccgactgtccacagaagtgaagttcattagtccactc
aacattgccaaaaggtcaaagcaaaccagcgtaaaattgaatggtcaagttcatgttccg
acccatcagagcaatgtttcggtttcctcacaccctgggtctggtttcaaaatggcctcc
aataagaagatacgttttttttcagcaaatctggagaaagacgaggatctgtttaaggag
attgaggatgaaatacctgcagtcaatattcccgagataagccttcctgaggaaggtaac
atgtcatgtggattggagcttgttgatggatctcatttaccacctctactctatacacac
cagaggtctgttaatagccaaggtccattgacagcctcacagagagctgatgtttcagaa
ttgtgcaatctcttagaagctgcagacagccaatttgagttcacacagtttaaaccagca
aagctgaacttctatgttccagatggtagcccccctcatcaatctgagaaagaattggat
cccgactttctcacaggcatagatttcgatgacagtttcaactctgatgttgagaagcaa
tctgtgaagatggtcacccctgacaaaaagacaactatttctcattgcaaggaaatttgt
caagtaacaaccaccaaaattaaatctagtggggcatcatccagcaattcaacagagaaa
tccaaagaacatgttatccacagaagagtactttacattcccagttatagctctgaaaac
atagctgagcattcctttggtttgttgacaaaatccacaaacaagaaccatctactcgat
atggatacgaacaccagtggaatggagtgtgaacgcaaaaagttggatgtgggttttaaa
actgctggcggaaatgctatgatagtttcagagaagtgtctgagcaaagcaagggccttg
tttgcagattttgaggaaaaaaactgtgcacccaagtgtgcagtaaaaaatacggaacaa
gttgaaatttcacctgttcaatatagaggtgaagttgacacacatgttgattcaaatgtg
acacattttcatggccctgaaaataaagtagatctgaaggaaccacatgatgaatacatt
gacaagattaaagtggactttacacattctcacacacatggggatggtggtttccagaca
gccagtggtaaaggagtgaccatctcggcaaaggcccttcaaaacaccaatgcagtcttc
aaagactgtgacgctatggaaagttcaggttgtgcatcagaaaagctgagcaaaacaagt
gttgtatcagagactggcagtaataattttgagagaaacaattgtggcttcagcactgct
cgagggaagagacttgatgtttctgcaaaatctctactgactctcctgaatgactgtgat
gaattggaaaattctaagccagggaaaatccccagcttgaatgcaaagataccaagtcag
aatattcagcagaaaagtgactgtgattttaagaaacccagtattaaagcagcctccata
tcagcaaggatcccttttacagcaaaaactcaatttgatagtggcatgtcacatgatgtt
ctaggggcaaagagcaaaatgcttgaaccagaaaattctcaaacccatgctaaagatcct
ttgaaaaatggatgtgggttcagcactgccagtggtaaaagagtgtctgtgtcagaaggg
gcgctattgaaagcacaggctcttttgagtgaatgtaatgtagatggagaggaactttct
aaatcaaagaaaaagatcagagtagatcttcataacccaacacagaagcacagtggatgt
aagactgctggtgtcaaagaagttaccgtatcacctaaggcccataagcaagcacaggct
cttttcaacaactgtgatttcaatatggacagcttaatcagtgctgaagcaaagcaaggg
aatatagacgtaaagtctgctgatggtctgatgaacaatccagggaaaagctattgtgcc
ttcatgacagctggtggagagaatgtgcatgtatctgaaaaaggtattttgaaggcgaag
agcattctgaatgaaaaccttgataactgcacagactcaaatgccattgaggaggcttgg
ttttcagatggtagatttttgttactcactgaagatggtacaggtgtcaaaaaaggagca
agaaacaaatcaaatgattctgacctcaacggggatgaaaagagctgtgatttcagcact
gccggtgggaagactgtgcatatgtccgatggagcactccagaaagcaaagtctattctg
aacgaatgtgatgtaattgaaaatccacaacctgagaatggccacaacgtgcatctggaa
aagattccaacaaaggaaacgcatgaaatctctcatggtagtgcagccagtgggaatggg
gtgtttatttcagaaaaggctcttcagcatgtgaagtctgtgtacgttctgggtgagact
ggtaatgtaaaatattcagttggcagtaatccagtcggaagccattttggttttagcaca
gccagtggtaaaggactgtctgtttcagagaaggcacttcaagaagcgtgtgatgatacc
cttgccagggatactgaccctcacaaaagatctgaaggaaataggccactgaaggtccct
tctccccatattaatgttcagcgtgtgccggtcaaagcagttcgactggaggaccgtgaa
gtgatccagaccattgttggaatggaatggaagtcttcatctgtagaatgtcaagcggag
tattccttgttaaattttgaatcccttggattcagtggctgctctgtgacccagaggagg
tactttgcccaggaggccatggattgtaccaaggctcttttagaggacgaagacttgacc
gatcattgtcctggaacaccaatccaagctaaccccatgtcctgcaaggggggttttgag
atgagaagtggaattgggaaaaggtcggcagaggatttagggatgacagaccagcctcct
ctgaaaagaaaactcttgaccaaattcgacagaactgtggattgtattcgacggtcaaaa
ctcactccagctaaaagcagttcagatggtatatttaaagacaggagagtcttcaaatat
aatgtggctcttcaacctaatgtcacgaggccatatcgcgctattcagagatgtgtagac
acaaggctgaataagcccgagccacagaagacaacgtcagatccaactgccgaagaccgt
aaaccagttagctccaagacagctgtatttgtccccccattccggaagaatgtcaagctt
gagccacaggggagcagtggtcttcaggacaagactagagcgcctggtgtgtttgtttcc
ccgtttctaaaaaacaaccgcttaaccagggagggttcctttaagccttcagaagataat
cattctcccttcatctctgaaatgcctaccaagaccacatctgttccacttcctgagtac
aaccccatcactgacactggtagtgataacgcaaaggagtccattaaggaacaggaccca
caaaatattgacaaaacggaccgaggtgatgattgtggccattgccttcctgtcacccta
ggaggagagggtgccactgcagaggagtctattgcaggtcagctagcccctgatgccacc
ggtacccttctagatgttgtttatgatgcagagtgcttgcagcttgcccgagacatgcag
gacatgaggatcaggaagaagaagcggcagaccattagacctctccctggcagcctgtac
ctggccaagacatctggggtgtccaggctgaccctcagagaggctgttggaggttggcac
cctgtacaacacacgcacaaacagctgtatggctatggagtgcaccggcatgtttgggat
atcagcagtgagagtgctgaggcgttccgctttgtttgccgacacttcttcagacgcgag
gcgtttgtagaggggtgcattcagctggccgacgggggttggctcattcctcgcaacgat
ggaactgcagggaaacatgagttccacagagcattgtgtgacagccctggcgtggacccc
aagctgatcagtgaggactgggtgttcaaccactaccgctgggtggtgtggaaacgggcc
tgcatggagagggcattcccagaggtgatgggcagcctctgtctcacaccagaacaggtg
ctcctacaactgaaatacaggtacgacttggaggtggacaacagcaagaggtcagctcta
aggaagatcatggagagagacgacacggcagtcaagaccctggtgctttgtgtatgtggt
gttgtcaccaaaggccataacccaacaaggcagagctggagtgagaccaagaccaaaacc
ccacccgggagcgccgcagggtctaaagcgaagtcgtcccctgtaggcttgatctggctg
acggatggctggtacgccatcaaggcccagctggacgtcccactgaccgccatgctccac
cggggccgcctggcgattgggggaaaggtgctggtccacggggccgagttggtgggatct
caggatgcctgctccccactagaggctcccgactccctcatgttgaagattggggccaac
ggcaccagagcggcgcgttggtacaccaggctagggttctacagcaaccctagtccgttc
ctcctccccctctcctccctctacagcaacggaggcaccgtgggctgtgtggacattgtg
gtgctgaggagctaccctacccagtggatggagaagaagtcggatggagggtttgtgttc
cgcgcaggccgtgcagaggagagggaggcacggcgtcatggcaacgccaaacacagagcc
atggagatactgttcgccaagatccaggcccagtttgagaaggaggaggatgttacaaaa
ccttttccgcctactgaacatcacccaacagtttgcggtaaacccagaggccggagacgg
accctgcgtggtcgagacattgagacactgctggacggggaggagctgtacgacgcggtg
gagaatgacccagtttatttggagggccgtctgagtgaggagcaacgggaggcgttgaac
agctataggcgttgtgttggtgagaggaggcaagaggcactgcaggagcggtttcgccag
gctctggaaagcacccaggagggcgagggcaggagctgtcacaaccgagacgtgaccccc
atctggaagctcagcatcgctgactccagggccaagccgggcagcaatgcagtgtacctg
ttgaatatctggcgcccctccatggatctgcagtccttgctgaaggagggctgtcgatac
agggcctaccaactatccacgtcggagggcaagaaacgagccggtaatacctccattcag
ctcaccgccaccaagaaaacccagttccagaatttacaggcttctgcagggtggttgtct
gagattttccaaccccgagaggcggtcggcttccgcgttctcctgaacttaaagccgctc
tgtggagaggtggatctggtaggctacgtcatctccatcacagacagacaaggtcactct
ccagtggtgtatctagtggatggctggctggactttgtcgaggtgcgctgctgcagcagt
ctggtccagcagggcttggaggaggtggtcaagcctttggctctggtggccctcagtaac
cttcagctcagagcccatccctcctcccccacccccatccgcagcgccatccctggccta
tacgctggagatctagtctcgttttccaccaaccctaaggaaccacatctacaggaggct
gctgctcaactcaggacccttgtccagggccaggaacacttcttcaggactgcagaggag
aggttatctaacttaatccaggtgtctgtccagtgtcttcctccgctgccatggaaagca
gatgccaaaccagattcaaggactactatgaaaccccagcagtcagttcgaagcgttggc
cccttcacccctctgaacagcgtcgtcccacctccacccgcctgcttctcagggggggac
aacaaagaccccaagagcttgaaaagaaagaggggcctggactacctgtgtcgcatcccc
tctccccctccactctgccccttgggcaccatgacattaccctcgccgtgcgtcaacaag
accttcaacacccctcggagggctgagacccaccggatcctaaagacacctctggccccc
gctccacagcatgtccacctgcccctagaggatgagtgggtggaggatgaagagctgttc
atgattgacactcaggccttacacgatggcatagagagagacacgtga
DBGET
integrated database retrieval system