Oncorhynchus mykiss (rainbow trout): 110490219
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Entry
110490219 CDS
T07259
Name
(RefSeq) laminin subunit beta-1 isoform X1
KO
K05636
laminin, beta 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04510
Focal adhesion
omy04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110490219
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110490219
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
OVT1
DUF948
Motif
Other DBs
NCBI-GeneID:
110490219
NCBI-ProteinID:
XP_036800391
Ensembl:
ENSOMYG00000025042
LinkDB
All DBs
Position
15:49065642..49106682
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AA seq
1817 aa
AA seq
DB search
MHATASGLAKNHPTDKYQCLTLENVDIAHRITFDIISYTQCCFCLAALWWRSFAQLPEFG
DVCTEGSCYPATGDLLIGRAHQLTASSTCGIEKPERFCIVGHLEEEKKCFVCDSREMYDE
RLNHTTSHSIENLVTTFAPNRLKTWWQSENGVENVTIQLNLEAEFHFTHLIMTFKTFRPA
TMVIERSMDFGKKWQVYRYYSYDCESAFPGISVGPMVKVDSIICDSRYSDIEPSAEGEVI
FRVLDPAFEIEDPYSPRIQNMLKITNLRVQFSKLHTLGDNLLDSRDEVTEKYYYALFDMV
VRGNCFCYGHASKCAPVDGIHVGTEGMVHGHCMCNHNTEGLNCEHCKDFYNDLPWRPAEG
HNTNACKMCECNHHSRSCHFDMAVYLSTGNVSGGVCDECQHKTTGRQCEQCRPFYYQHPE
RHLRDPNICEPCSCDPAGSLQGGVCDGRTDVSAGLIAGQCRCKTSVEGERCDHCRQGHYG
LGQGPNGCLQCTCNPLGTLPGGSPCDMDTGNCFCKRLVTGRNCDQCLPRHWGLSNDMDGC
RPCDCDQGGAVNNDCSPISGQCQCREHMYGRRCDQLESGYYFIALDHYTYEAEDAKHGPG
VTVVPRPYPLNRSPTWTGAGFVNVPEGAHLEFHINNLPDSMDYDVLIRYEPQLPEQWEQV
EIRVIRPYSMRVGQPVSPCENTLPGGDQQSVSLPPGSRHVVLLRPVCLDKGRNYTLRLSL
PLYSSLSDVQSPYTLIDSLVLIPRVRELELFEGSEGEEAWDTFQRYRCLESSQSVIKSPM
TDICNDYIFSVSALLHQGAMACQCDSQGSLSAVCDPRGGQCRCRPNMAGRNCDRCAPATF
QFSPSGCRPCECNPVGSVNAFCHEATGQCECVAGASGRQCAHCLPGYWGFPQCRPCQCNG
NSDYCHPQTGECQGCRASTTGHMCERCLDGYHGDPVLGLGGHCRPCMCPDGPGSGRQYAD
GCYQTANNYQLVCVCSPGYRGARCDKCAPGHYGNPQVPSGRCLPCQCSDNIDQLDPGSCD
ARTGVCLKCLHHTEGYGCRRCKLGYYGNAVTQSCRRCMCYSVGTTSEACPSPGECHCDLQ
TGQCPCRPNVIGQNCDRCAPDTFNIGSGQGCQTCDCDPTHSFGTSCNELSGQCSCRPGFG
GRKCNECRDKFWGDPEVKCQACDCDLRGIASEQCHRSSGQCVCVEGVSGPRCNQCARGYH
GEFPACQRCHQCFGEWDSVVGELTNQAQRLKDHVTELQTNGVTAPYTDTVSSLEISANAI
SGIVENNPAIQKMEDVQQMMQQVTEMVADLNERLTVSEDSLSRLVVNANYTEASLDTLRE
QAQELERTVKDIGDQIKTVKNSNIEGAMDTITDAHLESKRAEIRVNQTTSYPDNTLEQSA
TLRREAEARLSQNQAEFDLRQQKHTERLERLTMELETLDLSELSKQTCGAAGGEEGCAAS
PCGGVGCVSEDGTHRCGGDGCDGLVTQTQSTLKTAKDFDQEILSTMQEVDKLSRMVWEVK
VHADEAKLSAREVLLKSNQSRDGVEHTNEQLRSLIKEIRDLLTNDRANVEVIEAVSNEVL
ALKMPTSPGQLEALTKEIRDRVGTLTSVEDILSQSANDIHTTERLLEQARTASQEASEVN
ETTALVKEALDTTERAQNAAIDAVKQAYNNTRGTLDLITSVESETAESELLLSNATLRLL
QLERDVTLLRESSLDTSHRTQNTERLSETAKQDAERALQEFDSEVKGQYSVVEGLVVTKA
VGVSDAKKRAELLQQEAKELLTQTSGKLQRLRELERSYAANQRTLEAKAGQLAGLEKTAR
QLLDDISQKVMIYSTCS
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcaactgcttcaggacttgccaaaaaccacccgacggataaatatcaatgttta
acactcgaaaatgttgatattgctcatcgcatcacttttgacatcatcagctacactcaa
tgctgtttctgtctggcagccctctggtggcggtcctttgcgcagctgccggagtttggg
gatgtgtgcactgaggggagctgctaccccgccaccggggaccttctgatcggccgtgcg
caccagctcacagcctcctccacctgcggcattgagaagcctgaacgcttttgcattgtt
ggtcacctggaggaggagaagaagtgttttgtgtgtgactccagggagatgtatgatgag
aggctgaaccacacgaccagccacagcatcgaaaacttggtcaccacctttgcccccaac
cgcctcaagacctggtggcagtctgagaatggggtggagaatgtgaccattcaactgaac
ctggaagctgagttccacttcacacatctcatcatgacctttaagacgttccgtccggct
accatggtgatcgagcgttccatggattttgggaagaagtggcaggtgtaccgttactat
agctacgactgtgagtccgccttccctgggatatccgtgggacccatggtcaaagtggac
agcatcatctgtgactcccgctattctgacatagagccatccgcagagggagaggtgata
ttcagggtgctggacccagcgtttgagattgaagacccttacagtcccaggatacagaac
atgctgaagatcactaacctgcgtgtccagtttagtaagctccacacactgggtgacaac
ctgctggactccagagacgaggtcacagagaaatactattatgccctcttcgacatggtc
gtccgcggcaactgcttctgctacggacatgcctccaagtgtgcccctgtcgatgggata
catgtaggcacagagggcatggtccatggtcactgcatgtgtaaccacaacacagagggt
ctgaactgtgagcactgtaaggacttctacaacgacctgccctggaggcctgcagaggga
cacaacaccaatgcctgcaagatgtgtgagtgtaaccaccactccaggtcatgtcacttt
gacatggctgtgtatctgtctacggggaacgtgagtggaggagtgtgtgatgagtgtcaa
cacaagaccacggggcgtcagtgtgagcagtgcagacccttctactaccagcaccccgaa
agacacctgagagaccccaacatctgtgaaccgtgtagctgtgacccggcgggctccctg
cagggtggtgtgtgtgacggcaggacagatgtgtccgctggtctgatagcaggacagtgt
cgctgtaagaccagtgtggagggagagcgctgcgaccactgtagacagggacactacggc
ctggggcagggcccaaacggctgcctgcagtgtacatgtaaccctctgggcacgctacct
ggaggaagcccatgtgacatggacacaggaaactgcttctgcaaacgccttgtcactggc
aggaactgtgaccagtgtctgccgcgtcactgggggctgagcaatgacatggacggctgc
agaccatgtgactgcgaccagggcggagccgtcaacaatgattgttctccgatatcaggc
cagtgtcagtgtcgagaacacatgtatgggaggcgttgtgaccagctggagtcaggatac
tacttcatcgccctggaccactacacctacgaggccgaggacgccaagcacggccctggt
gtgacggtggttcccaggccctatcctctgaaccgtagtcctacctggacaggggcaggg
tttgtcaacgtacctgagggagcccacctggagttccacatcaacaacctacctgactcc
atggactacgacgtgctgatccgctatgaaccacaattgcctgagcagtgggagcaggtg
gagatcagagtgatacgtccgtactcaatgagagtggggcagccagtcagtccttgtgaa
aacacgctaccaggaggagatcagcagtcggtgtctcttcctccaggatccagacatgtg
gtgctcctgaggcctgtgtgtctggacaagggacggaactacaccctgcgtctcagtctg
cctctctactcctctctcagtgacgtccaaagcccctacacactcatcgactccttggtg
ttgattccgcgggtgcgtgagctggagttgtttgagggttccgagggcgaggaggcgtgg
gatacgttccagaggtaccgctgtctggagagcagccagagcgtcatcaagagccccatg
acggacatctgtaacgactacatcttcagtgtgtctgccctgctacaccagggggctatg
gcgtgccagtgtgactcccagggctcgctcagtgcggtgtgcgaccccagaggtgggcag
tgccggtgtcggcccaacatggcgggcaggaactgtgaccgctgtgcccccgccaccttc
cagttcagcccttcaggatgccgaccctgtgagtgtaaccctgtgggttctgtgaacgct
ttctgccacgaggccacaggtcagtgtgagtgtgtggcaggggcatcagggcgtcagtgt
gcccactgcctgccaggctactggggcttccctcaatgccggccctgccagtgcaacggc
aacagcgactactgccaccctcagactggggagtgccagggctgccgtgcctccaccacc
gggcacatgtgtgaaaggtgtctggatggttaccatggcgaccccgtgttgggtttgggg
ggtcactgccgcccctgcatgtgtccagatgggccggggagcggacgccagtatgcagac
ggctgctaccagaccgccaacaactaccagctggtctgtgtctgcagccctggatacaga
ggagccaggtgtgacaagtgtgccccaggacactatggtaacccccaggtgcccagcggg
cgctgtctgccctgccagtgtagcgacaacattgaccagctggacccgggatcctgcgac
gctcgcacaggcgtctgcctcaaatgcctgcaccataccgagggctatggctgccggcgc
tgcaagctgggttactacggcaacgccgtcacccagagttgcaggaggtgtatgtgttat
tcagtgggcacgacgtcggaggcgtgtccatccccgggggagtgtcactgtgacctgcag
actggccagtgtccgtgccggcctaacgtgattggccagaactgtgaccgctgtgcccct
gatacgttcaacataggaagcggacaaggctgccagacctgtgactgtgacccaacccac
tcctttgggacgtcgtgcaacgagctgtcggggcagtgctcatgcaggccaggtttcggg
ggaagaaaatgcaacgaatgccgagataagttctggggagatcctgaggtcaaatgtcaa
gcgtgtgactgtgacctgcgtggcatcgccagcgagcagtgccaccgttcgtccggccag
tgtgtgtgtgtggagggtgtttctggaccccggtgtaaccagtgtgccagagggtaccat
ggggagttccccgcctgccaacgatgccaccagtgcttcggcgagtgggacagcgtggta
ggggaactgaccaaccaggcgcagcgtttgaaggatcatgtgacagagctccagaccaat
ggagtgacggcgccgtacacagacaccgttagcagtctggagattagtgctaatgctatc
agtgggatagtagagaacaaccctgctatacagaagatggaagatgtacaacagatgatg
cagcaggtcactgagatggtggcagacctgaacgagaggctgaccgtctcagaggattcc
ctgtcccgtctcgttgtaaatgccaactacaccgaggccagtctggacacactgagagag
caggcccaagagctagagagaacagtcaaagacattggagaccagataaagactgtgaag
aactctaacatagagggagcgatggacaccatcaccgatgcccacttggagtctaagagg
gcggagatccgtgtcaatcagaccaccagttaccccgacaacactttggaacagtcggct
acactacggcgcgaagcggaggccagactgagccagaaccaggcggagtttgacctgaga
caacagaaacacacagagagactggagaggcttaccatggagctcgaaactcttgaccta
tcagagctcagcaagcagacatgtggagcggctggtggggaggaggggtgcgctgcgtca
ccctgtggaggggtggggtgtgtgtcggaggacggcacccatcgctgtggtggagacggg
tgtgacggtctggtcacacagacacaaagcactctgaaaacagccaaggactttgaccag
gaaatcctgtccaccatgcaggaagtggataagctctctagaatggtgtgggaggtgaag
gtgcatgcggacgaggccaagctgagtgctcgggaggtgctgctgaagtccaaccagagc
cgagatggagtggagcacaccaacgagcagctccgcagcctcatcaaggagatacgagac
ctactcactaacgaccgtgccaacgtggaggttatcgaagcggtgtcgaacgaggtgttg
gccctgaagatgcccacgtcgcccgggcagctggaggccctgaccaaggagatcagagac
agggtgggaaccctcaccagcgtggaggacatcctcagtcagagtgccaacgacatacac
actacagagaggctgctggagcaggctcgcactgccagtcaggaggcgtctgaggtgaac
gagacaactgccctggtgaaggaggctctggatacaactgagcgtgctcagaatgctgcc
atcgacgccgtcaagcaggcctacaacaacaccaggggtacacttgacctcatcacgtct
gtggagtcggagactgcggagtcagagctgcttctgagtaatgccacactgcgtctgctg
cagctggagagagacgtgactctgctgagagagagcagcctggacaccagccaccgcaca
cagaacactgagagactgtctgagaccgccaagcaggacgcagagcgggccctgcaggag
tttgactcggaggtgaagggtcagtacagtgttgtggagggcttggtggtgacgaaggcc
gtgggcgtgtctgatgccaagaagagggcggagctactccagcaggaggccaaggagctg
ctcacccagaccagcggaaaactacagagactcagagagttggagaggtcgtatgcagcc
aaccagcgtactctagaggccaaggcaggtcagctggccgggctggagaaaacagcacgc
cagctgctcgatgacatcagccagaaagtcatgatctacagcacctgttcttag
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