Oncorhynchus mykiss (rainbow trout): 110490577
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Entry
110490577 CDS
T07259
Name
(RefSeq) lumican
KO
K08122
lumican
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
omy00535
]
110490577
Proteoglycans [BR:
omy00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class II
110490577
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GFIT
Motif
Pfam:
LRR_8
LRR_4
LRRNT
LRR_9
LRR_14
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
110490577
NCBI-ProteinID:
XP_021419682
Ensembl:
ENSOMYG00000034937
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Position
15:complement(62886728..62890920)
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AA seq
342 aa
AA seq
DB search
MFPLRVPIFAVLVSLTVGQYDDYDYQPASQYGPSSANCAQECECPINFPTAMYCDSRNLK
FVPIVPSGIKYLYLQNNLIEEIKAGVFDNVTAELRWLVLDHNQITNEKVAKGTIDKLTGL
HKILFSFNKLTEAVIPPSMSLDELKMMNNQLSKFPAGSLAGMQNLTSVHLQNNELTSKAL
NGVFKGLNKLVAIDLTNNKLKKLPSGMPSSLETFYGDHNGISSIAAGDLKELPKLAYLRL
AYNQMTDAGIPAGVFNVTSLIELDLSYNKLQSIPEINEQLEHLYLQVNEINKFNLENICK
FSGPLNYSRLKHLRLDGNNITHADLPHDSSNCLRQASDIIFD
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgtttcccctccgtgtccccatctttgccgtgctggtaagcctgaccgtgggtcagtac
gatgactacgactaccagccggcctcccagtatggcccgtccagcgccaactgtgcccag
gaatgcgagtgccccatcaacttccccactgccatgtactgtgactcccgcaaccttaag
tttgtgcccattgtgccctcaggcatcaagtacctgtacctgcagaacaatctgatcgag
gagatcaaggctggggtcttcgacaacgtcacggctgaactccgttggctggtcctggac
cataaccagatcaccaatgagaaggtggccaagggaaccatcgacaagctgaccggactt
cataagatcttgttcagcttcaacaaactgacggaagctgtgatccctccctccatgtct
ttggacgagctgaagatgatgaacaaccagctgtccaagttccccgcagggagtctggcc
ggcatgcagaacctgacctcagtccacctccagaacaacgagttgacctctaaagctctt
aacggggtcttcaagggcctcaacaagctggtggccatagacttgaccaacaacaagctg
aagaagctgccctcaggcatgcccagttcgctggagaccttctatggcgatcacaatggc
atcagcagcatcgccgccggggacctcaaagagctgcccaagctggcgtacctgaggttg
gcctacaatcagatgacggatgcagggattccggcgggcgtgttcaatgtgacgagcctg
atcgagctggatctgtcctacaacaagctgcagtccatccctgagatcaacgaacagctg
gagcatctctatctgcaggtcaacgaaatcaacaagttcaacctggagaatatttgcaag
ttctctggccctctgaactactccagactgaagcacctgcgtctggatgggaacaacatc
acacatgccgacctaccccatgactcctccaactgcctgcgccaagcctctgacatcatc
ttcgactaa
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