Oncorhynchus mykiss (rainbow trout): 110491054
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Entry
110491054 CDS
T07259
Name
(RefSeq) neural cell adhesion molecule L1 isoform X1
KO
K06550
L1 cell adhesion molecule
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
110491054
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
omy04515
]
110491054
04090 CD molecules [BR:
omy04090
]
110491054
04091 Lectins [BR:
omy04091
]
110491054
Cell adhesion molecules [BR:
omy04515
]
Immunoglobulin superfamily
L1 family
110491054
CD molecules [BR:
omy04090
]
Proteins
110491054
Lectins [BR:
omy04091
]
I-type lectins (Siglecs)
110491054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
fn3
ig
Ig_2
V-set
Bravo_FIGEY
Ig_DSCAM-DSCAML_C
C2-set_2
C2-set_3
Pur_ac_phosph_N
Ig_5
Sp38
V-set_CD47
DUF4998
Motif
Other DBs
NCBI-GeneID:
110491054
NCBI-ProteinID:
XP_036802756
LinkDB
All DBs
Position
16:39972344..40053788
Genome browser
AA seq
1293 aa
AA seq
DB search
MPRTQRQQVGSRGRRTPLPLLLLPLFSLLLSHTPQLSQAAIHIPPNYQINEFKKPPVITT
QPESITVFGAEDILLTCEASGNPPPEFRWKKDGVEFIPANYPGLSMSLGSGTFMTTGAGS
GPMSQYQGKYSCYADNELGTAVSKEVQLITEHTPALQKEKKVKKKVEEGESVILKCNPPF
STVPPVIHWMDKRLRHIELNDRVTQGRDGNLYFSHVTADDNRNDYTCNAQYLSARTILSK
EPISLTVTISNSVVRNRRPQMMRPSGAHSTYHTLRGQSLELECIVQGLPTPTVQWVRRDG
QLSESRTLRDLSDRLLRFSNISESDGGEYQCSANNSQGTVTHIYTVSVEAAPYWTKEPVS
QLYAPGETVRLDCQADGIPSPAVAWSMNGNPITGIDLDPRRIVRDGALILRDVVFTDTAV
YQCQAHNKHGTILVNTYIFVIELPPQILSADGQTYTVTEGQKAGLHCQTFGSPRPKVTWE
VDNGASLLADPRVNLLTNGSLQITNVSHDDEGLYTCSISNTNMSINAELEVLNRTVILSP
PGDLRVRPGKTVIFTCLAQVDSKLTPPHIQWRRSGQKLMQSYAEDKYTFEGPDLIVANVQ
TEDEGVYTCEVITNLDMAEASGSITLVDRPDPPTQLQVSDPKDRGVTLSWTAGDDHNSPV
IEFRVEFKDHVSNEWGWEELKRVSGTEKSVNLALQPYVSYRFRVISVNDIGKSDPSTPSD
LHSTPPQAPDNNPEDVRSESTEPDTLVITWEEMDRRVFNGPEFQYKVFWRRVVGDGPTWH
SNVTTEPPYIVTEVGNFSAFEIKVQAVNQKGEGPEPDPVIGYSGENVPLEAPMDVGVVLL
NSTAIRVTWAAVDRDTVRGHLLGYKIHLTRFGSRGHHRGRRAREPESSMVVETGANEEKR
VLGGLRPYSHYALTVTVFNSKGEGPPSDPPLSFSTDEGAPGPPMSLHLESPAETEMTLHW
TPPAQPNGVLKGYLLQYQQIVESDDSPVQVETIDDHTLTKLTLKQLDPKSRYRFYLRGRT
SAGDGEPITREGATTLDGAPPSNISLSVGEKCVNLSWVPGQRHRSVGFQVQYLNKNNGGK
WKQSEKLNSSQSFYQLKGLTPGSQYRLRFTFSNNTFWETEIRTEGAGVVDVQTGFATQGW
FIGLVSAIVLLLLVLLILCFIKRSKGGKYSVKDKEEGQVDSEARPMKDETFGEYRLWKRS
LESDNEEKRTASQPSLCDESKLCTSEDNLDGYNNGSSAVTEVNMEDSLVSQYSRPSEATP
DPGTLQDSSPLNPTATTPTPTNNGLPNSAAILD
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcacgcagcgacagcaggttggcagtagggggcgacgcacccctctccccctc
ctccttctccctctcttctccctcctcctatcccacactcctcagctcagccaagcagct
atacacatacctcccaactaccaaataaatgaattcaaaaagcccccagtgatcaccacc
cagcctgagtccatcaccgtgttcggtgctgaagacatcctcctgacctgcgaagcatca
ggaaaccctcctccggagtttcgttggaaaaaggatggggtggaatttatcccagccaat
tacccgggcctgtcgatgtctctgggttccggaaccttcatgacaacaggggcagggtca
ggacccatgagccaataccagggcaaatacagctgctacgctgataacgagctgggcacc
gctgtctctaaagaggtccagctcatcactgagcacaccccggccctccagaaagagaag
aaggtgaaaaagaaggtggaagaaggagagagtgtgatactgaaatgtaaccctcctttc
agcactgttcctcctgtcatccactggatggacaagagactccgtcacattgagctgaat
gatcgcgtgacccaaggccgggacgggaacctctacttctctcacgttacagccgacgac
aaccgcaacgactacacctgtaatgcccagtaccttagtgctcgcaccatcctctccaag
gaacccatcagcctcaccgtaaccatctctaactcagtggtgcggaaccgaagaccccag
atgatgaggccctcaggggcccacagcacttaccacaccctccggggccagagcctggag
ctggagtgcatcgtccagggcctccctacccctacagtccagtgggtgaggagggacggt
cagctgtccgagtctcgtacactcagagatctgtctgaccgcctgctgcgcttcagtaac
atctcagagagcgacgggggagaataccagtgttcagccaacaactcacagggcacggtc
acacacatctacaccgtcagcgtcgaagctgctccgtactggaccaaggagcccgtgagc
cagctttatgccccaggagagacagtgagactggactgtcaggccgatggcattccctcg
cctgctgtcgcctggagcatgaatggaaatcccatcacaggtatagaccttgaccccagg
cgtattgtgagagatggagctctgattctgagagatgtggtcttcactgatacagcagtc
taccagtgtcaggcccacaacaaacacggaaccatcctagtcaatacctacatctttgtc
atcgagctgccgcctcagatcctgagtgcagacggacagacatacactgtcacagaggga
cagaaggctggtctacactgtcagacctttgggtctcccagacctaaagttacatgggag
gtggacaatggcgcgtctcttctggctgaccccagggttaacctgctgaccaatggaagc
ctccagatcaccaacgtctcccatgacgacgagggcctgtacacctgctccatcagcaac
accaacatgtcaatcaatgctgagctggaggtgctgaacaggacagtgatcctgtctcct
cccggggacctgcgtgttaggcctgggaagacggtcatatttacctgcctggctcaggtg
gactccaaactgacccccccacacatccaatggaggaggagtggacagaaactaatgcag
tcgtacgctgaggacaagtacacgtttgagggccccgacctgatcgtggccaacgtgcag
accgaggacgagggggtttacacctgtgaggtcatcactaacctggatatggctgaggcc
agcggatccatcacgctagtcgaccgtccagatcctcccacccagctccaggtctctgac
cctaaagaccgtggagtgactctcagctggaccgctggagatgaccacaacagccctgtc
atagagtttcgggtggagtttaaggatcatgtttctaacgagtggggttgggaggagctg
aaacgtgttagtggaaccgaaaagagtgtgaaccttgccctgcagccctatgtgtcctac
cgtttccgggtcatctccgtcaacgacatcgggaagagtgatcccagcacgccttctgac
cttcacagcacgccacctcaagctccagacaacaaccctgaggatgtgaggagtgagtct
acagagccagacaccctggtcatcacgtgggaggaaatggacaggcgtgtgttcaacgga
ccggagttccagtacaaggtgttctggaggagggtagtaggtgacggccccacctggcac
tctaatgtcaccactgagccaccgtacattgttactgaagtgggcaacttctcagccttc
gagatcaaagtacaggctgtcaatcagaaaggggagggacctgagccagaccctgtcatt
ggctactccggagagaatgtccccctggaggctcctatggatgtgggtgttgtgctgctc
aacagtacagccatcagggtaacatgggcagcagtggacagagatactgtcagaggacac
ctactgggatacaagatccacctgacaaggttcggctccaggggccaccaccggggtcgg
agggccagagagccggagagcagcatggtggtggagacaggggccaatgaggagaagagg
gtcctggggggccttagaccctactcccactacgccctcacagtcactgtgttcaacagc
aagggagaggggcccccctccgacccccccctgtccttcagtaccgacgagggagctcct
ggcccccccatgtctctccacctggaaagccctgcagagacagagatgacccttcactgg
accccccctgctcagcccaacggggttctcaaaggatacctgctgcagtatcaacagatc
gtggagagtgatgacagcccggtgcaggtggagaccatagacgaccacacgctgaccaaa
ctgaccctgaagcagctggaccccaagagccgttaccgcttctacctgagggggcgcacc
tcggccggagacggagagcccattacaagggagggcgccaccacgctggatggagctcct
ccgtccaacatcagcttgtctgtaggtgagaagtgtgttaacctgagctgggtgccaggc
cagagacacaggagtgtgggcttccaggtccagtacctcaacaagaacaacggtggaaag
tggaagcagtctgagaagctgaactcgtctcagtcattctaccagctgaagggtctaacc
ccaggatcacagtaccggctcagatttaccttcagcaacaacaccttctgggagacggag
atcaggacagagggagcaggagtggtggatgtgcagacaggctttgctactcagggctgg
ttcattgggcttgtgagcgccatcgtgctgttgctgctggtactgctcatcctctgcttc
atcaagaggagcaaggggggaaagtattcagtcaaagataaggaggagggtcaggtagac
tctgaggcgcgccctatgaaggatgaaacgttcggagagtacagactttggaaaagatct
ctagaaagcgataacgaggagaagcggacagccagccagccgtctctgtgtgacgagagc
aagctgtgtaccagtgaggacaacctggatggctacaacaacggcagcagtgctgtcacc
gaggtgaacatggaggattccctggtcagccagtacagccggcccagcgaagccaccccg
gacccgggtacactgcaggacagctcccccctcaaccccaccgccaccaccccaacaccc
accaacaacggcctgcctaactcggcggccatcttagattag
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