Oncorhynchus mykiss (rainbow trout): 110491116 Help Entry 110491116         CDS       T07259                                  Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism omy  Oncorhynchus mykiss (rainbow trout) Pathway omy04510   Focal adhesion omy04512   ECM-receptor interaction omy04518   Integrin signaling Brite KEGG Orthology (KO) [BR:omy00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     110491116    04518 Integrin signaling     110491116  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     110491116  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:omy00536]     110491116 Glycosaminoglycan binding proteins [BR:omy00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    110491116 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  110491116 NCBI-ProteinID:  XP_036803238 UniProt:  A0A8K9UMB7 LinkDB All DBs Position 16:complement(56009188..56036787) Genome browser AA seq 1420 aa AA seqDB search MFSFVDSRTVLLLVASQVVLLSIVRCQEEDDHVVIGAKGQKGEPGEIADVVGANGPAGPM GPSGEQGPRGSAGAKGDKGNVGPRGRDGEPGTPGNPGPPGPPGPNGPAGLGGNFAAQMAG GFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPAGPLGPHGPP GPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGEGGAA GAKGEGGAPGENGASGPMGPRGLPGERGRPGPSGSAGARGNDGLPGPAGPPGPVGPAGAP GFPGSPGAKGEAGPTGARGTEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKGSSGAS GIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPIGPHGAPGPA GEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGSKGAPGDRGVPGVGGPKGGT GDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGARGQPGVMGFP GPKGANGEPGKAGEKGLVGRQGLIGLAGKDGETGAAGPLGPPGPAGERGEQGAAGPSGFQ GLPGPAGPPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGAGPQGLQGPRGLPGTP GSDGPKGAIGPAGGAGAQGPPGLQGMPGERGAGGISGAKGDRGDNGEKGPEGASGKDGSR GLSGPIGPPGPAGPNGIKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFAGPPGADGQP GAKGELGEAGQKGDGGAHGPQGPSGAPGPVGPTGVSGPKGARGAQGASGATGFPGAAGRV GSPGPNGNPGAAGPAGPAGKDGPKGVRGDSGTPGRQGDAGLRGAAGAPGEKGDAGGDGLP GPDGPSGPQGLAGTRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAGGDRGPPGPVGPP GLSGPSGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAPGPVGPLGKQ GDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQGLPGPP GSAGDQGAAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPLGPPGPRGRSGETGPAGPPGNP GPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVDSTLKSLNNQ IENLRSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETGETCVY PSIANVPQKNWWTSKSNDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFLRLLSTEASQ SLTYHCKNSVAYMDTSTGNLKKALLLQGSNDVEIRAEGNSRFTYSVVEDGCKKHTGQWGK TVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGTVCFL NT seq 4263 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta ctatccattgtcagatgtcaggaagaggatgaccacgtggtgattggtgctaagggccag aagggggaacccggcgagattgcagatgttgtaggagcaaatggaccagcaggccctatg ggcccctcaggcgagcagggacctcgtggatcagccggagctaagggtgataagggaaat gttggccccagaggcagagatggcgagcctggcaccccagggaaccccggaccccctggc ccacccggacctaacggacctgcaggccttggcgggaactttgctgctcagatggctggt ggattcgatgagaaagctggaggtgcacagatgggagtgatgcaaggacctatgggccct atgggtccccgtggtccccctggcccttctggagcccctggcccacaaggtttccaaggt aaccctggagagactggagagccaggcccagctggcccactgggaccacacggaccaccc ggaccttctggcaaaccaggaagtgatggtgaggctggcaaacctggaaaggctggtgag cgtggacctgcaggacctcagggagctcgtggattccccggaactcctggtcttcctgga atcaaaggacacaggggtcaccctggtctggatggagctaagggagaaggcggtgctgct ggagccaagggtgagggtggtgctcccggagagaacggcgcgtctggaccaatgggacca cgtggtctgcctggcgagagaggccgtcccggaccttctggctctgctggtgcccgaggt aatgatggcttgcctggccctgctggtcctcccgggcctgttgggcctgctggagcaccc ggtttccctggatccccaggagccaagggagaagctggccccactggtgcacgtggaact gagggcgcacagggaccccgtggagaggctggtacacccggatctcctggacccgctggt gcctctggcaaccctggtactgatggtatccctggagctaaaggatcttctggcgcttct ggaattgctggtgcacctggtttccccggaccccgtggcccccccggacctcagggagca acaggacctcttggacccaagggacagtctggagaccccggtattcctggcttcaaagga gaggctggtcccaagggagagcttggccctataggtccccatggcgcccctggccccgct ggcgaggagggcaagagaggagcaagaggagagcccggtgctgctggaccacttggacct cctggcgagagaggagctcccggtaaccgtggtttcccaggtcaggatggtcttgctggt tctaagggagcccctggtgaccgtggtgttcccggtgtgggtgggcctaagggaggcact ggtgaccccggccgcacaggagagcctggtcttcctggagccagaggtctcactggtcgc cctggagatgctggtcctcaaggcaaagttggtcctggtggtgctgctggtgaggatggt cgccccggcccacctggtcctcagggagcccgtggccagcctggtgtgatgggattcccc ggaccaaagggagccaatggtgagcctggcaaggcaggagagaagggtcttgtgggtcgt caaggtctgatcggtctggctggtaaagatggtgagactggtgctgctggacctcttggc cctcctggacctgctggagagagaggagagcaaggagctgctggaccttcaggcttccag ggtctgcccggacctgctggccccccaggagagggaggcaagcctggtgatgcgggtgtt cctggagaggctggtgctgctggtgctacaggacctagaggcgagcgtggtttccctggt gagagaggcggtgctggacctcagggtctgcagggacctcgtggactccctggaactcct ggaagtgatggaccgaagggagccattgggccagctggtggtgctggagctcagggaccc ccaggtctgcagggtatgccaggagagaggggagctggtggaatctccggcgccaagggt gacagaggtgacaatggagagaaaggacctgagggcgcttctggaaaagacggttctaga ggtttgagtggtcccattggtcctcctggcccagctggtcccaatggcataaagggtgag ggtggaccttctggcccaactggagctgctggtgcccgtggtgctcctggtgaccgtggt gagggtggtccccccgggcctgctggcttcgctgggccacctggtgctgatggtcagcct ggagccaagggagagttaggcgaggctggacagaagggagatggtggtgcccatggacct caaggaccctctggggcccctggacctgtgggtcccactggtgtttctggacctaaagga gctcgtggtgcccagggggcttctggtgctactggtttccctggtgctgctggaagagtt ggttctcccgggcctaacggtaaccctggtgctgctggccccgctggtcctgctggtaaa gacggtcctaagggagttcgtggtgactctggaaccccaggaagacagggagacgctggg ctgcgtggagctgctggagcccctggcgagaagggagatgctggaggggatggtctccct ggtcccgatggtccttcaggtccccagggtctggctgggacacgtggtattgttggtctg cctgggcagcgtggagagaggggcttccctggccttcctggtccttctggagagcccggt aagcagggagctcctggtgctggtggtgaccgtggaccccctgggcctgtggggcctcct ggactgtctggaccttctggcgagcccggaagagagggcaacgctggatctgatgggccc cctggtagagatggatccaccggagtcaagggtgagcgtggtaacactggtcctgcaggt gcacctggcgcccctggcgctcccggtgcccccggccctgtcggccccctgggcaagcag ggagacagaggagagggaggtgctcaagggcctgccggacccgctgggccagctggcgct agaggaatggctggaccccaaggaccccgtggagacaagggagaggctggcgagacagga gagaggggacagaagggacaccgtggcttcaccggtctgcagggtcttcccggacctcca ggctccgctggagaccaaggagctgctggacctgccggacctagtggtgctaagggaccc cctggcccagtcggccccgctggtaaggatggatctaacggtcagcctggacccctcgga ccccctggacctcgtggtcgttctggagaaactggccctgctggtccacctggtaacccc ggaccccctggtcctcctggtcctcccggccctggcatcgacatgtctgcctttgctggc ctgtctcagcctgagaagtctccggatcccctgaggtacatgagagctgatgaggcgtcc agctccctgaggcagcacgacgtggaggtggactccacactcaagtccctcaacaaccag atcgagaacctgcgcagccctgatggtagccagaagaaccctgcccgcacctgcagagac ctcaaactgtgccacccagagtggaagagcggtgactactgggtggatcctaacattggt agcacagctgatgccatcaaggtcttctgcaacatggagactggcgagacctgtgtgtac cccagcatagccaacgtgcctcaaaagaactggtggacaagcaagagcaacgaccgcaaa catgtctggttcggagagaccatgaatggaggattccacttcagctacgctgaggacggt accaacgctgccagtatccagctgaccttcctgaggctgctgtccacggaagcgtctcag agcctcacctaccactgcaagaacagcgtggcctatatggacacatccacgggcaacctg aagaaggctctgctgctccagggctccaacgacgtggagatcagagctgagggaaacagc cgcttcacctacagcgttgtggaggatggctgcaagaaacacacaggccagtggggaaag actgtcttcgagtacaaaacacagaagacctcccgtctgcccatcgtggacattgctccc atggacattggaggagcggaccaggagttcggtgtggatgtgggaacagtctgcttcttg taa

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