Oncorhynchus mykiss (rainbow trout): 110491345
Help
Entry
110491345 CDS
T07259
Symbol
cspg4
Name
(RefSeq) chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
omy00535
]
110491345 (cspg4)
04091 Lectins [BR:
omy04091
]
110491345 (cspg4)
Proteoglycans [BR:
omy00535
]
Cell surface proteoglycans
Others
110491345 (cspg4)
Lectins [BR:
omy04091
]
C-Type lectins
Others
110491345 (cspg4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
DUF5562
Motif
Other DBs
NCBI-GeneID:
110491345
NCBI-ProteinID:
XP_021420400
Ensembl:
ENSOMYG00000019100
LinkDB
All DBs
Position
2:52903191..53018812
Genome browser
AA seq
2334 aa
AA seq
DB search
MRALRLVLLSAFLPLLCLPSPSHGASYFGDSFCKITSIQDVSSFHLSLQFKTSRRSGLLL
LAAGMQDYLFLELQNGKLQVRMNLGAGEMVLSSSLGLQLNNLLEHKVSITMQEAKLTMLI
DDLFSTFISVPETQEDLNIDMGVYMGGTGDLDAPYLSNAIPPFRGCMTNVKLESHQFDIL
DSEPIDCHDTKESCSSEFEVGDGEATSFISPDSFVSFPTWSGASGSERTLEFLMKTTIED
ALLTFHPGRESDFIAVGVVGGYLKGVVDFGSGIVVLDNPRVQLDDDQWHRIRVTVDASVF
EVNVDSQPASLSLRGSERLDLVGNLYMGGIQGKMKDVFRDSSLSRMEEVITSESFIGCMG
EIKVNQKERSLQDALVTKDVHVKCEGEDYDYSSYYDFEATTTTAPVRIRYVDADPNETHC
YPTDDTPEAFRNITKLIEVNPLLVPEGGEAFLDINNLSPTFNLNTVGIRQSQIIFTLQND
PWYGLVDMNINTRRTKKFTLLDVVNKKIKYLHDGNEKYGDQIQLEVFAHSNSYLPGCLKN
PHQYILPVEIIPVNDTPQLSGGNIFITENGRTRLNPNLIKIVDSDTRCEELIVTVTSEPP
RGVGYLENAQQPGKSIKEFTCRQLKDGNIYFVHRTGSGGITLQVSDGQSISHSTTFKLSI
TQPQMSLVTNTGLLLSQGSNSSIGIQNLAVIATPRNGDIVFNVTQALRYGELHVLTRNGL
PKQVTSFHQSDLEQDRLRYVSTVSSDLEDVVSDHLQFDVHLGQFSLWNNTFLIKITPSQV
KMAQVVPLEIEGKVEQKAIKHTDLEAEVKGKSVAPETIRYILLKAPTLGTLQMIGRKLVE
GDSFTQQDLWNAQVSYRVQVQRAVANEDQFQFRVFAENQYSPMYTYPIKIQADSDAPVLT
NERLIVLEGGENILNKDYLWVQTSISTNFVYRVTQDPKYGRLIRESPSGQPRFDGAIRMF
SNEDLNLDRLIYQHDGSESSDDEFSFLVFEQAAGSENIRIDGQESMSSMFRISIQSKNDH
VPLRVVDKTFNVVRNGQRLLTTEDILFRDNDSGFNDTQLVFVRTGILSGNIVSPSDPSQP
LFRFTQADVKDQNVLFVHHGADRERFQLQVSDGLHKTTALLQIQAGEAYLRVVNNTMVVM
DHGSTKTLNTSLLSAESNMDIRDASEIRYQVTSPPSDGKIIVSGIEASWFTQEDLKKGVV
SYEHNDQSLSSKDSFGFTVEAKGVSEEGTFRIKIFKQGYLSEPVVITNEVIISYEGEHTV
INQDHLKVEQADILPSEMVFTIKEPPRLGHVVMLTNHSDSTAAPSLDYIHSFTQEDVNRG
RILYVSASIQGSDAFAADVSNGFTTVDDLRMMVDIVPRLIPIQALNFSVREGGGMALTTE
LLNISHPFYSAVNVDFVVEEPPQHGDIRYLDGDEQELNFFTWEEVKLGHIYYLHDSTESG
EDNFTLSASAYEIERRSLPVTFTVTVFPVNDEAPKLTCNTGLEVLAGEESDITTSMLNTE
DADTPINELVYSIESTINGLVALKVEPDKEIQNFTQAQINNGEVIFIHEGLESGGFSFTV
TDGEHTSPLYRFVVTARQLTITMETGEELKIFPGTRHAITSAILKAVTNEDGDEISFSLV
RPPRLGRLILANDRNQFEEITRFSQSDLESGAVFYEHQMPEKPFWVVRDSVELLLSSPPA
PAVHHVLPITVSYSAASHNISSQLWKNRGLDIVQGQRKVIDSSILDASNLLASLPEAERG
LLDVVFEVRRFPAHGRVTLGGLNLPQGAPYFMQEDVAQGELEYLHDDSGASVDSFSFRAR
LNSQGRGILHPSPAQAVVLEEVFNISIRRRDSSPPELVSLDVLLEVLQGSMTVITQKYLN
TRDEDSTPDEVRFTVSKAPTNGRLVDATKGDHISSFTQEAVNKGQVGFVSDGSLSDGFIE
FTVSDGKHHTEPHTLHVGVLARTLVLAKAPEIQVLQGDDETLVTEEMLRATTGGPNEEEV
LYKITSVPKYAAVMVDRQPTSAFTQTQIREGRVSVRFIKSTSPRDSVAFVARSRAANVSS
VLNITVKPLANIPQELLLPRGATVLLDKKLLDATPLANKTRTSPTFSVIQQPQGARFVRA
GGRGPEGDGQPVDTFTQKELDEGRVAMEILNGTGGSQAQDVARFLLKAHGVPPAECVLSF
KTTPYNASAVYPATLLKVPGGSAWSNSNDLPGGAGSPRITPASPRWRGNMDWPQGGDAPT
TAYTDKDSHRKPVVSRRNNLWSILIPILILLLLLLLVAILAFYLVRRNKTGKHNVQTVAG
SKPKNGEISQETFRKTDPANNIPMSQMDSKDADPELLQHCRTTNPELKKNQYWV
NT seq
7005 nt
NT seq
+upstream
nt +downstream
nt
atgagagccctgcgtttggtcctgctgagtgccttcttgcccctgctctgtctgcccagc
cccagccatggagcatcctactttggggacagtttctgcaagataacttcgatccaagat
gtctcctcctttcacctgtcactgcagttcaagaccagccgacgaagtggactcctcctc
ctggctgcagggatgcaggactacctatttctggaactccaaaatgggaaattacaggtg
cgaatgaaccttggggccggtgagatggtgctatcatcatctctggggctgcaactgaac
aacctcctggagcacaaggtgtctatcacgatgcaggaggccaaactgaccatgctgatc
gatgatctcttttccactttcatctctgtgcctgaaacccaggaggacctcaacattgac
atgggggtttacatggggggaaccggagacttagacgccccatatctcagcaatgccata
cctccattccgtggctgcatgaccaatgtcaagttggagtcccatcagtttgatattctc
gactccgagcccattgactgccatgatacaaaggagtcctgtagcagtgagtttgaggtt
ggtgatggagaggcgaccagctttatcagcccagactcatttgtgtccttccctacttgg
agcggggctagtggtagtgaaaggaccttggagtttctcatgaagaccaccatcgaggat
gccctactcaccttccaccctggacgagagtcagactttatagctgttggcgttgtgggc
ggttacctaaaaggtgtggtggactttgggagtgggattgtggtactggacaaccccaga
gtacagctagatgatgatcagtggcataggatcagagtcactgtagatgcgagtgtgttt
gaggttaacgtggacagccagcctgcctctctctctctaaggggctcagagcgattggat
ctagttggcaatctgtatatgggggggatccagggcaagatgaaggatgtgtttcgtgat
agtagcttgtctcgtatggaggaggtaataacatctgagtcttttatcggatgcatggga
gaaatcaaagtgaaccagaaggagagaagcctgcaggatgcgttggtcaccaaagacgtc
catgtgaaatgcgagggagaggactatgactactcaagttactatgattttgaggcaacc
acaactacggctcctgttcggatccgatatgtcgacgctgaccctaatgaaacacattgc
tacccaactgacgacacaccagaggccttccggaacattacaaaacttattgaagtcaac
cctttgcttgtgcccgagggtggggaagcttttctcgatattaacaaccttagccctaca
tttaacctaaacactgtgggaatccgccaatcccagatcattttcactctacaaaatgac
ccttggtacggactcgtagatatgaacatcaataccagacgtaccaaaaagtttacactc
ctggacgtggtcaacaagaaaatcaagtatctccacgacggcaatgaaaagtatggcgat
cagatccaattggaggtgtttgcccatagtaacagttaccttccaggatgtcttaaaaat
ccccaccagtacattctcccagtggagatcatacctgtcaatgacacaccacaactaagc
ggaggaaacattttcatcacagaaaacggtcgcactcgcttaaatcccaaccttatcaag
attgtggattcggacactcgctgtgaggaattgattgtcaccgtgacctcagaacctccc
agaggggttggctacttagaaaatgcccagcaaccaggaaaaagtatcaaagagttcaca
tgcaggcagttgaaagacggcaatatatattttgtccacagaactgggagcggtgggata
actctacaggtatctgacggacaatccataagtcattcgaccacttttaaactgtccatt
acacagccccaaatgagccttgtgaccaatactggccttctgttgtctcagggaagcaat
tcttccattgggatccagaacctggccgtcattgccacccctcgtaatggagatattgtg
tttaatgtcactcaggctctgagatatggtgaattgcatgttctcactcgcaatggtttg
cccaaacaggtgacatcttttcaccagtcagatttggagcaagatcgcttgagatatgtt
agcacagtttcaagtgacctggaggacgttgtgtcagatcatcttcaatttgatgtccat
cttggacagttttccctatggaacaatacttttttgatcaagatcacaccctcccaggtt
aaaatggcccaagtagttccccttgagattgaaggcaaggtagagcaaaaggcaataaaa
cacactgatcttgaagcagaagtgaagggaaaaagtgtagccccagaaactataagatac
atccttctgaaggcccccacactgggtactcttcaaatgattggcaggaagctagttgag
ggagacagtttcacacaacaggacctctggaatgcccaggtcagctatagagtccaggtg
caaagggcggtggctaatgaggaccagttccagttcagagtctttgcagagaatcagtac
tcccctatgtatacctacccaatcaagatccaggctgattcagatgcccctgttttgact
aatgagagactcattgtcttggagggcggggagaatattctgaacaaagactatctatgg
gttcagacatccatctcgacaaactttgtttacagggtgacgcaagaccccaagtatggc
cgtctcatcagggagtccccatctggacagcccaggttcgacggggctattagaatgttc
agcaatgaggatctgaatctagataggctgatttaccaacatgatggctcagagtctagc
gatgatgagttctctttcctggtattcgagcaagcagcaggaagtgaaaacatcagaatc
gatggtcaagagtctatgagcagcatgtttagaatatctattcagtccaagaacgaccac
gtgcctcttagagtggttgataaaaccttcaatgtggtgcgaaacggacaacgtttgctg
accacagaagatatcctcttcagggacaatgactcagggttcaatgatacccagttggtc
tttgttcgcacaggcattctctcaggaaatattgtctccccatcagacccctcgcagccc
ctctttcgtttcactcaagcagacgtcaaagaccagaatgttctatttgtgcaccatgga
gcagaccgtgagcgcttccagctccaggtttctgatggcctgcataagaccacagccctg
ctgcagatccaggctggtgaggcctacctccgtgtggtgaacaacactatggttgttatg
gaccatggaagcacaaagacactcaacaccagtctgttgagtgcagagtccaacatggac
attagagacgccagtgaaattaggtaccaagtgacatcaccccctagtgatgggaagatc
atcgtgagtgggattgaggcctcttggttcacacaggaggatctgaaaaagggtgtggtg
tcctacgagcataacgaccagagtctgagctccaaggactcgtttggcttcactgtggaa
gcgaaaggagtttctgaggagggtacattcagaataaagatcttcaagcaaggctatctg
tctgagcctgtggtcatcaccaatgaggtcatcatctcctatgagggagagcacactgtg
atcaaccaagatcatcttaaggtagaacaagcagacatcctgccctctgagatggtgttc
accatcaaggagcctcctcgtctgggccacgtggtcatgctgaccaaccactcggacagt
acggctgcgcccagcctcgactacatacactccttcacccaggaggatgtcaacaggggg
cgcatcctctatgtctctgcctccatccagggcagtgacgccttcgcggctgacgtcagc
aacgggttcaccaccgtggatgacctccggatgatggtggacattgtgcctcgcctcatc
cccatccaggccctcaacttcagtgtcagggagggcggtgggatggcccttaccactgag
ctcctgaatatttctcacccattctacagtgcggtcaacgtggacttcgtcgtagaggag
ccaccgcagcatggggatatccgctacttggatggtgacgaacaagagctcaacttcttt
acctgggaggaggtgaaacttggacacatctactacttacatgacagcacggaaagtggc
gaggacaatttcacactctctgcctcagcctatgagatagagcgccgcagccttcctgtt
accttcactgtcaccgtcttcccggtcaacgatgaggcacctaaactgacatgcaacaca
ggactggaggttttagctggagaggaatcggacatcaccaccagcatgttgaatacagaa
gatgcagacacccccatcaatgagttggtttattccatcgagtcaaccatcaatgggttg
gtggctctaaaggtggaacctgacaaagaaattcagaacttcacacaggcacaaattaac
aatggggaagtcatctttatccatgaaggtctggagtctggaggcttcagttttaccgtg
acagatggagagcacacctcgcctctctaccgctttgtcgttacagctagacagctcacc
atcaccatggaaaccggggaggagctaaagatctttccaggaacaagacatgccatcacc
agtgccattttgaaggcagtgaccaatgaggatggagatgagataagcttctcattggtc
aggcctcctcgcctgggaagactgatcttagccaacgacaggaaccagtttgaagagatc
acacgcttctctcaatcagatctggagtccggggccgtcttttacgagcaccagatgcct
gagaagcccttctgggtggtccgggactctgtggagctcctgctctcctcccctccagcc
cccgctgtgcatcacgtcctccccatcaccgtgtcctactccgcagccagccacaacatc
tcctcacagctctggaagaacagaggtctggacatagtgcaaggtcagaggaaggtgatt
gacagttccatcctggacgcctccaacctgctggccagcctccccgaggcggagcgaggt
ctcttggacgtggtctttgaggtgcgccgcttcccggcccatgggagagtcaccctgggg
ggcctgaatctgccccagggtgccccctacttcatgcaggaggatgtggcgcagggcgag
ctggaatacctccacgatgactctggagcctccgtggacagcttctccttccgagcccgg
ctcaactcccagggccgcggcatccttcacccctccccagcccaggcagtggtcctggag
gaggtcttcaacatctcgatccggagaagggactctagtcctccagagctggtgagcttg
gacgttcttctggaggttctccagggctccatgacggtgatcacccaaaagtacctaaac
acccgcgacgaggacagcacgcctgatgaggtgcgcttcacagtctccaaggcgcccacc
aacgggcggctggtggatgccaccaagggcgaccacatctcctcgttcacccaggaggcg
gtcaacaagggccaggtgggctttgtcagtgacggaagcctgtcggacggcttcatagag
ttcactgtgtcggacgggaagcaccacactgagccgcacactctccatgtaggagtcctg
gcccggacgctggtgctggccaaagccccagagatccaggtgctgcagggggacgacgag
accctagtgacagaggagatgttgagggccaccacaggcggccccaatgaggaggaagtc
ctctacaagatcaccagtgtgcccaagtacgctgccgtcatggtggaccggcagcccacg
tcggccttcacccagacccagataagggagggccgggtgagcgttcgcttcatcaagtcc
acctctccccgggacagcgtggcctttgtggcccggagccgggcggccaatgtctcctct
gtcctcaacatcacggtcaagcctctggccaacatcccccaggaactcctgctgccacgg
ggtgccaccgtgctgctggacaagaagctgctggatgccacgccgctggccaacaagacc
cggacatcacccaccttcagcgtcatccagcaaccgcaaggcgcccgcttcgtgagggct
ggcgggagagggccagagggagatggccagcccgtagacacgttcacccagaaagaactg
gatgagggacgtgtagccatggagatcctgaatggaacaggaggcagccaagctcaggac
gtggctcgcttcctgctcaaggcccacggggtccctccagctgagtgcgttctctccttc
aagacgaccccttacaacgcctcagcggtctacccggccactctccttaaggtccctggc
gggtctgcatggtccaatagcaacgacctccctggaggggcggggtccccacgcatcacc
ccagccagccctcgctggaggggcaacatggactggcctcaaggaggagatgcccctacc
actgcctacactgacaaagactcccataggaaaccagtggtgtccaggaggaacaacctg
tggtccatcctcatccccattctgatcctcctgctcctcctcctgctggtggccatcttg
gctttctacttggtgcgtcgcaacaagacgggcaaacacaatgtgcagacggtggctggc
tccaagcccaaaaacggagagatcagccaggagaccttccggaaaaccgacccggccaat
aacatccccatgtcccaaatggactccaaagacgccgacccggaattgctgcagcactgt
cggacaacgaacccggagttaaaaaagaaccagtactgggtatga
DBGET
integrated database retrieval system
