Oncorhynchus mykiss (rainbow trout): 110491480
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Entry
110491480 CDS
T07259
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110491480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110491480
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110491480
Spliceosome [BR:
omy03041
]
Complex C
Other components
Step II factors
110491480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
GIPC1_GH2
T2SSE
AAA_16
PhoH
Sigma54_activ_2
TsaE
ABC_tran
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
110491480
NCBI-ProteinID:
XP_021420637
Ensembl:
ENSOMYG00000040006
UniProt:
A0A060W418
LinkDB
All DBs
Position
16:complement(17684471..17694082)
Genome browser
AA seq
1222 aa
AA seq
DB search
MLLFSSEHKTVSWIMSHIGDNELEQLEYLSLVSKVCTELDNHLGISDKDLAEFVISLAEK
QPTFDGFKSLLLKNGAEFTDSLVGNLLRLIQTMRPPPKASSSKAFEPVVKQKSDKDKLKE
LFPALCRPDDPAPKAILDEDDVKIADAAMKELEMFMPSVSRSDSKSKSRSDKKRRHSRSR
SRDRDRRRRHRSRSRSRSRSRSRDRDRQRERDRERDRDRGKKRASRWNERSRTPSPHRDR
DRDTKEGSDRWKDKHVDRPPPEEPTVGDIFNGKITSIMQFGCFVQLEGLRKRWEGLVHIS
ELRREGRVANVADVVQKGQRVKIKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNQGPDG
EEEKIMRNPDRPTNLNLGHAPELEDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPD
FDEETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMM
QSALAKERREVKQCQREAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPTDIPEW
KKHAFGGNKASYGKKTAMSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQI
TQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVI
KYMTDGMLLRECLIDPDLGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSA
TLDAVKFSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDVLV
FLTGQEEIDTACEILYERMKSLGPEVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIA
TNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGK
TYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAM
EQLYTLGSLDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF
YRPKDKQALADQKKAKFHQAEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDI
RKQMLGIMDRHKLDVVTCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPS
SALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRL
EPLYNRYEEPNAWRISRAFRRR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgttttcttctgaacacaaaacagtctcttggataatgtcacacatcggcgat
aacgagctagaacaactggaatacctctcgttggtatccaaagtgtgcacagaactcgac
aaccatttggggataagtgataaagatctagctgagtttgtcatcagccttgctgaaaag
caaccaacatttgatggcttcaaatcacttctgctgaaaaatggagcagaattcacagat
tcactcgtcggcaatttgctcagacttattcaaacgatgcggcctccaccaaaggcatct
tcaagcaaagcctttgaacctgtggtcaagcagaagagtgacaaggacaagctgaaggaa
ttgtttcctgcattatgcaggccagacgatcctgctcccaaggccatattggatgaagac
gatgtgaagatcgccgacgctgccatgaaggagttggagatgttcatgcccagtgtgagc
agatcagactcaaagagcaagagcaggtcggacaaaaagaggaggcacagcagaagtcgg
agccgagaccgggacaggaggcggcgtcaccgttctcggtcccgctcacgctctaggtct
cgctctagggaccgggaccgtcagagagagagagaccgtgagcgggaccgcgaccgtggt
aagaaacgtgcgtctcgctggaatgagcgcagccgtacccccagcccccacagagaccga
gacagggacacaaaggaaggctcggaccggtggaaggacaaacacgtggaccgtcctcca
ccagaggagcctactgtaggggacatcttcaatggcaaaatcaccagcatcatgcagttt
ggctgcttcgtgcaactggaagggctgaggaaacgctgggagggcttagtccacatctcc
gagctgcgcagagagggacgcgttgccaatgtggctgatgtggtccagaaaggtcaaagg
gtcaagatcaaggtgctgtccttcactggctccaagaccagtctcagtatgaaggatgta
gaccaggaaacaggggaggacctgaaccccaaccggaggaggaaccagggccctgatggt
gaggaggagaaaatcatgaggaaccccgaccgcccaaccaacctcaacttgggccacgcc
cctgagttggaggacgacacactggagcgcaagaggctgaccaagatatcggaccccgag
aagtgggagatcaaacagatgattgctgctaatgttctttctaaagaggagttccctgac
tttgatgaggagaccggtatcctccccaaagtagatgacgaagaagacgaggacctggag
attgagctggtggaggaggagcctccgttcctgagaggacacactaaacagagtatggac
atgagccctgtcaagattgtcaagaatccagacggctcgctgtcccaggcagccatgatg
cagagtgctttggctaaggagaggagggaagtgaagcagtgtcagcgagaggccgagatg
gactccatccccatgggcctgaacaaacactgggtagaccccctgcctgacgttgatggg
agacagattgcagccaacatgagaggcatcggcatgatgccaactgacatcccggagtgg
aagaaacatgcctttgggggcaacaaggcctcttatggcaagaagacagcgatgtccatc
ctggagcagagagagagcctgcctatctacaagctgaaagagcagctcatacaggctgtc
cacgataaccagatcctgattgttattggcgagactggctctgggaaaaccacccagatc
acccagtacctggctgaggcagggtacaccactcgggggaagatcggctgcactcagccc
cgtcgtgtggcagccatgtccgtggccaagagagtctctgaagagtacggttgctgtctg
ggccaggaggttggatacaccattcgttttgaggactgcaccagccctgagacagtgatt
aagtacatgacggatggtatgttgctgagggagtgtctgatagatccggaccttggccag
tacgccattatcatgttggatgaggcccacgagaggaccatccataccgacgtactcttc
ggtctgctcaagaagacggtgcagaaacgcacggacatgaaactcattgtgacttcggcc
acacttgatgccgtcaagttctctcagtacttctacgaagcgcccatcttcaccatccca
gggcgtacctacccagtggaggtgctctacaccaaagagccggagacagactacctggat
gccagtctcatcaccgtcatgcagatccacctgactgagcccccgggtgatgtcctggtg
tttctgacgggccaggaggagatcgacaccgcttgtgagatcttgtatgaacggatgaag
tcactgggacctgaagtgcctgaactcatcatcctaccggtctactccgccctgcccagc
gagatgcagacccgtatctttgaccctgctccccccggcagcagaaaggtcgtcattgcc
actaacattgctgagacatctctgacaatcgacggtatctactatgtggtggacccaggc
tttgtgaagcaaaaggtgtacaactccaagactggtattgaccagctggtggtgaccccc
atctcacaggcccaagccaagcagcgggctggaagagctggaagaactggtccagggaag
acctacaggctgtacacagagagagcctacagagacgagatgctcaccaccaacgtgcct
gagatccagagaactaacttggccagcacggtgctgtctctcaaggctatgggcatcaat
gacctgctgtcgtttgacttcatggacgcgccacccatggagacgctgatcacggccatg
gagcagctctacactctggggtctctggacgatgaagggttgctcactcgccttggacgc
aggatggcagagttccctctggagcccatgctgtgtaagatgctgatcatgtccgtccac
ctgggctgcagtgaggagatgctcaccatcgtctccatgctgtctgtgcagaacgtcttc
tacaggcccaaggacaagcaggccctggctgaccagaagaaggcaaagttccaccaggcc
gaaggagaccaccttaccctgctggcagtgtataactcctggaagaacaacaagttctcc
aacccttggtgctacgagaacttcatccaggcccgctccttgcgcagagcccaggacatc
cgtaaacagatgttgggcatcatggacagacacaaactggacgtggtgacttgtggaaag
gccacagtgcgtgtacagaaggccatctgcagtggtttcttccggaacgcagccaaaaag
gatccccaggaaggctaccgtaccctcattgaccaacaggtggtgtacatccacccctcc
agtgccctgttcaaccgccagcctgagtgggtggtgtaccacgagctggtgctgaccacg
aaagagtacatgagggaagtgaccaccattgacccacgctggctggtagagttctcaccg
gccttcttcaaagtttccgaccccacacgcctcagcaaacagaagaagcagcagcgcctc
gagcccctctacaaccgctacgaagagcccaacgcatggagaatctcccgcgccttccgt
cggcgctag
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integrated database retrieval system
