Oncorhynchus mykiss (rainbow trout): 110491815 Help Entry 110491815         CDS       T07259                                  Symbol spg11 Name (RefSeq) spatacsin isoform X1   KO K19026   spatacsin Organism omy  Oncorhynchus mykiss (rainbow trout) Brite KEGG Orthology (KO) [BR:omy00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:omy03400]     110491815 (spg11) DNA repair and recombination proteins [BR:omy03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      110491815 (spg11) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Spatacsin_C DUF3350 PUL Motif Other DBs NCBI-GeneID:  110491815 NCBI-ProteinID:  XP_021421273 Ensembl:  ENSOMYG00000034201 LinkDB All DBs Position 2:54852812..54944780 Genome browser AA seq 2419 aa AA seqDB search MIMINMLHRSETRDNCALEVALIPESNLCENVVDTAKAKMAQGCSLLCCLSGAGGLTVGD ISESKAPGRTVDGTYTDFAWEEVTVYNGARGNPRLLAVSSECELTLYELEAEGPTSGPLV SASEFTAEKLLQLVKEKAQSVAEVVSLRLLSFVDARSFLLLNSSVVVQLQWQQGAEPETL SCCSIVLPPKAPLDTCTDYQLCRGILFVLTTAGVIYVFDSAEGRKLASVDLPSYHTAGLG EDELAPYLDSFCLLQVSPDLGTAVAATQSNTAFAVDLNHYFRMYPEHLMCRVVPSRPPLR PQGPCDEDSLSSSIYSHTVLGTSFSTDRSWEARLTSLYNKAKATPPSSPQTLGAPWFKDF PHIECGRAAIAAKLSQSRVPSGGATMQFSVPDTTAPVLLSVSEFSTVLTFGSPGNSETTV AFWDLQSQSVTYHRPTSPTVPIQRTAEEQLSLLLKTSGLSLVLFAVSQEELLNRLMVFGS AGTVDSLCHLNEWGRCAIPIHALQAGLKNHQLDTVDFFLKSKKNVLTPPSGYILADQSAT ISTQSQLKNVQDLCPALDLLRCAIRDNHTEAQSRQFSEQLLSITLAFLNTQVRAVLSATE ELDENLQECVEILDSYVSDLRTFMKRFPWPTGGDTSTLVPSPIPVPEEVENDDWSSLSSE EVVERAVLTKQIPRAQAYLRSQNRPDQRLEELRSTGLRLAFNCLTHKDLEQATALLRNMG FNVKKQLHNICLYTDDRDLRDFVVEELSKQSYLSDEETQRVEFIKQIEALCAVPETRCTD PVGRQRVPQMSQTDPGSKSLLEELVDQRGSQSEQTLWSSLRLDWVRHWDHNTQRAILLSR LQDSAAVSSCDPGVLWSYLTSHHDQRRVTEWIESLAAQNGDPSSAPQWPALTAEVVNNNT RCSTHMRNHILYMLARRGVFIQAEMADFEQLLWRLGQAGGVMQASPPIPQYRSPQGHDLH TRFIHHCLDNGLRYLLYTYLEHNRLTPRNCPALADNGLYESHPWFEMLVKMQEITRDLSD PERVFQASLTSAQVLIPGSQAMISSMLLEGHSLLALATIMFAPGGIDQVVSQGERAGSSV SRVDPQLLKMALSPYPKLKAALFPVSGTRGTTATTSDISVYHLMQSLHPLDPSRLFGWQS ANTLGSTETSVELPHFSSPHLVSKYALIENLDFLYYLRHGRPSFAYGTFLVQQLANSNEV KSQLSHAAQQAYSLAMLHFSVPSVAAACVCFCELLGVCSLKLRVDLKALSLILRLRTQRP GGTSTFSLKDLLAAKGSKLVEVERETAEELLFDLEEAVKDSLERKGTSRSSYEAGQEWAL PIQFCQLHALPLSSVYPQDCAADSQWLHFLLFVQLHTYPPQQVRSLATQFSPALQAHLTL AFQNLQLSSQWRVGEVEDREAQGQVTLPSEEASDPPKELFQVLLQSQEQASPWRHLLGEA LAQHCPTLTILAACHQEADLLQCLCVWVLTSVDEVIATEATAHLEESPQRHEWNLHDLSI IWKTLLRKCRIRPLIRGFQLFQRDSPLIHVLLMYELCYDYKNYPEAKKKLIEFQKCLITL RSSGAHAPAGIPLQWVECQASVLLLTMMQQCSTQYELRRLLQLLADMERLLKSNGPDFKK LSFLSQVLQDTSVSLSPRLLESYSPDILQGECQNMLEKLQDSGLFHKARQVAELAGLPID SLVINELLQDLGALKAKRHWERRETRVSFWRKCHEQFRTNSTGPGAASEFFLAQAGASEP PRGSVAGTELLCVQERCLLLSLAGHWLSWLAQAPLARLEDLEKQLWKNRVRQQVLLTAME KESMFALPAPTIAPEENSYEALIREFSFSKMAVLNEPRYLSLDGLPSFSPKEEGGEKTGS EEQGALAILVGQLLDEGCIHEASRVCRYFSFCSRDMWVVLHCRGLASGELQAGLQDMLTF EGLPKKSIPSSTSFSSLSSFVMVPSPEDQTVTQLQMLVDECRHGKSYCKQVLSLYELSKE LQCSYSEISAEEPQAVLCKVLLSQQPERYKKAQAFISVQGLQPDTVAQLVSNAVVQGLLA SAQDGETAEKQMFSPEEGRESFLQLAKLCGDPNLVGIKLLDHIPTVPLGELGCTVELLIL AHDCFSLTCNMEGIVRVLQAARHLSHAHLAHSEHYGLLVRLLTGIGRYNDMTYIFDLLNQ NHRFEMLLRKKVESNFRLKTALLDYIKRCLPGDSEKYNMVALCFSMCREIGENHEGAART QLKLIESQPWAVTPELRSALIKVLTLLKDAAESYSKDSCVRQAARCVKMAKLTTLQLHFL NHGQDQRVINLRQSDLLGAIVALPRCYQAFVLSEAYDYSPDWAEVLYQKVILSGDFSYLE EFRLHRPLPACLFEDISQKLTHNTPPSSAGQNLKRLLQHCDDVYTYYKLAYEHKFFDVAN MLLQDSKTSSYLNDRLGTR NT seq 7260 nt NT seq  +upstreamnt  +downstreamnt atgattatgataaatatgttgcacagatctgaaactcgagataactgtgcattagaagtc gctctcatcccggagagcaacctctgtgaaaatgttgtggacacagcaaaagctaaaatg gcccaaggctgctccttgctctgttgcttgagtggtgctggggggctgacagtcggcgac atttcagagagcaaggcaccggggagaacggtggatggcacatatacagactttgcctgg gaggaggtgacagtttacaatggagcccgtggcaaccctagacttctggctgtgagctct gagtgtgagttgacactgtatgaactggaagcagagggccctacctctggccctcttgtc tctgcctctgagttcacagcagagaagctactgcagctggtcaaggagaaagcccagagt gtggctgaggtggtgtccttgaggctgctgtcctttgtggatgccagaagctttctcctg ctcaactccagtgttgtggtacagctgcagtggcagcagggggctgaaccggagaccctg tcctgctgcagcatcgttctgcccccaaaggcccccctggacacatgcactgactaccag ctctgcagaggcatactctttgtgttgaccacagctggagtcatatatgtgtttgacagt gctgaggggaggaagctggccagtgtagacctgccctcgtaccacactgctgggctgggg gaagatgagctggccccctacctggactccttctgtctcctccaggtgtctcctgacctg ggtactgctgttgctgccactcagtctaacactgcctttgctgtcgacctcaaccactac ttcaggatgtacccagagcatctgatgtgtcgagtggtccccagtcgccctcccctcagg ccccagggtccctgtgacgaggacagcctctccagctccatctacagccacactgtgctg ggcacctccttcagcactgaccggtcctgggaagctaggctgacttctctgtacaacaag gccaaggctacccctccctcttctcctcagactctgggggctccttggtttaaggatttc ccccacatcgagtgtgggcgggcagctatcgctgccaagctctcccagagcagagtccca tcagggggagccaccatgcagttctctgtgcccgacacaactgccccagtgctgctctct gtctctgaattctccactgtgttgacctttggctcccctggtaacagcgagacaactgtg gccttctgggatctgcagtcccagagtgttacctaccaccggcccacctcgcccaccgtg cctatccagcgtaccgcagaggagcagctcagcctgcttctgaagacgtcaggcctgtcc ctggtgctgtttgctgtgtcacaggaggagctgctcaacagactaatggtatttggcagt gctggcacagtggactctctgtgccaccttaatgaatggggccgctgcgccatccccatt cacgccttgcaggctggtctaaagaaccaccagttggacacagtggacttcttcctgaag agcaaaaagaacgtcctgactccaccctctgggtatattctagctgaccaatcagctacc atctcaacccagagccagctgaagaatgtccaggatctgtgtccggctctggaccttctg cgttgtgccatcagagacaatcatactgaggcccagagccgacaattttcagaacagctg ctcagcatcaccctggccttcctcaacacacaagtcagggccgtcctctccgccacagag gagctggatgagaacctgcaggagtgtgtggagatcttggatagttacgtctcggatctg cgtaccttcatgaagaggtttccctggccaacaggtggcgacacttccacccttgtccca tcccccatacctgtacctgaggaggtggagaatgatgactggagttccctctcttctgag gaggtggtcgagcgggcagtgctgaccaagcagattccccgggcccaggcctacctgagg agccagaacaggccagatcagcggctggaggagttgaggagtacggggctgcgtctggcc ttcaactgcctgacacacaaagacctggagcaggccactgcactgctcaggaacatgggt ttcaacgtaaagaagcaactgcataacatatgcctctacacagatgaccgggacctaagg gactttgtggtggaggagttgtcaaagcagagctatttgtctgatgaagagacacagagg gtggaattcatcaaacagattgaggctttgtgtgcggtgcctgagacgcgctgcacagac cctgtgggcagacaacgggttcctcagatgtcccagacagacccagggtctaagagtctg ctggaggagctggtagaccagagaggctcccagtcagaacagacactgtggagctcgctg cgtctggactgggtcagacattgggaccacaacacccagcgagccatcctgctgtcacgc ctacaagactcggcagctgtcagttcctgtgacccgggggtcctgtggtcatacctcacc tcccaccacgaccagcggagggtcaccgagtggattgagagcctagccgcccagaatggt gacccttccagcgccccccagtggcccgccctcacggcagaggtggtcaacaacaacacc cggtgcagcacccacatgaggaaccacatcctctacatgttggccaggagaggagtgttc atccaggccgagatggctgattttgagcagctgttgtggaggctgggccaggcaggtggg gtgatgcaggccagcccacccattccccagtaccgctcccctcaaggacacgacttacac acacgcttcatccaccactgcctggacaatggccttcgctacctgctctacacctacctg gagcacaacaggttgacacccaggaattgccctgctctagctgataatggtctatatgaa agtcacccgtggtttgaaatgctggtgaaaatgcaagagattaccagagacctctcagat ccagaacgtgtgttccaggccagtctgaccagtgcccaggtcctcatcccaggcagccag gccatgattagcagcatgctcctggaaggacacagtcttctggccctcgctaccatcatg tttgccccgggtggcatcgaccaggtggtgagtcagggggagagggctgggagctctgtg tctagggtggacccccagctactgaagatggccctgagcccctaccccaagctcaaggca gcgctcttccctgtgagcggaacacgagggaccaccgccaccacatccgatatctccgtc taccacctcatgcagtctttacatccattggatccatctcgactgttcgggtggcagtct gccaatacactaggctccaccgagacctcagtggagctgccccatttctctagtcctcac ctcgtcagtaaatacgccctaattgagaacctcgacttcctctactatctgcgtcacgga cgaccatcgttcgcctacggaacgtttctcgtccaacagctagccaactccaacgaagtg aagtcacagctcagtcatgcggcgcagcaggcctacagcctggccatgctgcatttcagc gttccctctgtggcagctgcatgtgtgtgtttctgcgagctcctgggtgtgtgtagccta aagctgcgggtggacctcaaagccctcagtctgatcctccgactccggacccagaggcct ggtgggaccagcacattctcccttaaagacttactggctgctaaaggcagtaagctggtg gaggtggagagggagacagcggaagagctgctctttgacttggaggaagctgtgaaggac agtttggagaggaagggcaccagcaggtcatcctatgaggcaggtcaggagtgggctctg cccatacagttttgccagctacatgccctgcccctgagcagtgtgtacccgcaggactgt gcagccgacagccagtggctacacttcctgctctttgtccagctgcacacctacccccct cagcaggtgaggtccctggcgacccagttcagcccagccctgcaggcccacctgaccttg gccttccagaacctgcagctcagctctcagtggagggtgggggaggtggaagacagggag gcccagggtcaagtcaccctgcccagcgaggaagcctccgacccccccaaggagctgttc caggtgctgctgcagagccaggagcaggccagtccctggagacacctcctgggggaggcc ctggcacagcactgccccacgctcaccatactagctgcctgtcatcaggaagccgacctg ctccagtgcctctgcgtctgggtcctgacctctgtggatgaggtcattgccacagaggct accgcccacctggaagagagcccgcaacgtcatgagtggaacctccacgacctgtcaatc atctggaagacactgctgaggaaatgcaggatcaggcctctcatacgaggcttccagctc ttccagagggactctcccctgatccatgtgctgctcatgtacgagctgtgctacgactac aaaaactaccctgaagccaagaagaaactcattgagttccagaaatgcctgatcacgctg aggagcagtggtgctcatgcgccagcgggcatccctctccagtgggtggagtgccaggcc tcagtcctcctgttgaccatgatgcaacagtgctccacacaatacgagctgcgcagacta ctgcagctgctcgcagacatggagcgcctgctcaagtctaacggcccggacttcaagaag ctcagcttcctcagccaggttctccaggacacctcggtgtctctctctcccaggctgctt gagagctattcccctgacatcctgcagggagagtgccagaacatgttggagaagctgcaa gacagcgggctgttccacaaggcccgccaggtggccgagctggcagggctgcccattgac agcctggtcatcaacgagttactccaagacctcggtgccctgaaggccaagcggcactgg gagaggagggagacccgggtgtccttctggagaaaatgccacgagcagttcaggactaac agcactggtcctggggctgcctcggagttcttcctggcccaagcaggtgcctctgagcct ccccggggctccgtggccgggacagagctgctgtgtgtccaggagaggtgccttctcctc agcctggccggccactggctgtcctggctcgcccaagctcccctggcacgtctcgaggac ctggaaaagcagctgtggaaaaaccgagtgcgccagcaagtcctgctcaccgccatggag aaggagagcatgttcgccctcccggcgcccaccatagcccccgaggaaaactcctacgag gccctgatcagggagttctccttctccaagatggcagtgctcaacgagcccaggtaccta agcttggacggcctgcccagcttctcccctaaggaagagggtggggagaagactgggtcg gaggagcagggtgctctggctatcctggtggggcagctgttggacgaagggtgtatccac gaagcgagccgtgtgtgccgctacttctccttctgctcccgggacatgtgggtagtgctg cactgccgaggcctggcctcaggcgagctccaggctggcctgcaggacatgctcaccttc gagggcctgcccaagaagagcatacccagctcaaccagttttagcagcctgtcctccttt gtgatggtgccctccccagaggatcaaacagtgactcagctccagatgctggtggacgaa tgtcgccacggaaagagctactgcaagcaggtcctgagtctctacgagctctccaaggag ctgcagtgttcatacagtgagatctcagctgaggagcctcaggcggtgctgtgtaaggtg ctactgtcccagcagccggagcgctataagaaggcccaggccttcatcagtgtgcagggc ctgcagcctgacaccgtggcccagcttgtatccaacgccgtggtccagggcctgttggcc tctgcacaggacggagagactgcagagaagcagatgttcagtccagaggaagggagagag tccttcttgcagctggccaagctgtgtggggaccccaacctggtgggcatcaaactgctg gaccacatccccactgtgccactgggagagctcggctgcacggtggagctgttgatcctg gcccacgactgcttcagtctgacctgtaacatggagggcatagtgagggtgctgcaggct gcccgccacctcagccacgcacacctggcccacagcgaacactacggcctgctggtgcgt ctcctaactggcatcggaagatacaatgacatgacctacatcttcgacctgctcaaccag aaccaccgcttcgagatgctgctcaggaaaaaagtagagtctaacttccggctgaagacg gccctgctggactacatcaagcggtgtttgccgggggacagtgagaagtacaacatggtg gccctgtgcttcagcatgtgcagagagataggagagaaccacgagggagccgcccgcacc caactcaaactgatcgagtcccagccttgggcagtgacccctgaactcagaagtgccttg ataaaggttcttactctcctgaaggatgctgcagagagctattctaaggactcgtgtgta cgccaggcagcacgttgtgtcaaaatggcaaagctgaccacactccagctccacttcctg aaccacggtcaagaccaacgtgtcatcaacctgcgccaatcagatctccttggtgccata gtggcactgccccgctgttaccaggcttttgtgttgtcggaggcctacgactacagtcca gactgggcggaggtgctctaccagaaggtcatcctcagtggagacttttcttacctagag gagttccgacttcacaggccactccccgcctgcctgtttgaagacatatcccaaaaattg actcacaacacgcctccgagcagtgcgggccagaacctgaagagactattgcaacactgt gatgacgtttacacctactacaagcttgcgtatgaacacaagttcttcgacgtggccaac atgttacttcaggactccaaaacaagcagttacctaaacgacaggctaggtactaggtag

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