Oncorhynchus mykiss (rainbow trout): 110492327
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Entry
110492327 CDS
T07259
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013
Nucleocytoplasmic transport
omy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110492327
03015 mRNA surveillance pathway
110492327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110492327
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110492327
5.6.2.5 RNA 5'-3' helicase
110492327
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110492327
mRNA cycle factors
Common to processing body (P body) and stress granule
110492327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
NPHP3_N
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
UvrD_C_2
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
110492327
NCBI-ProteinID:
XP_021422262
Ensembl:
ENSOMYG00000000851
UniProt:
A0A8C7ND44
LinkDB
All DBs
Position
1:complement(16884927..16904976)
Genome browser
AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEGLHNGGVDDVAKASQLLAELNFEEDEEDTYYIKDLPLHACSYCGIHDPASVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGELAPLWKGIGH
VIKVPDTPFVKDYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDE
TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS
KPRKLVNAINPGARFMSTAMYDAREALIPGSAYDRSSAGRPSNMYFQTHDQIGMIGAGPA
HMAAMNMPIPFNLVIPPMPPPGYLAQANGPAAGRGGVLKGKAGRGGRQRTRGMGNHSGSG
QSNGPNSQASQDVSSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQI
DVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagttctcaaacgctcaccttcctggacacggaggaa
gcggagctacttggggctgatacccagggctcggagtacgagtttaccgattttactctc
cccagccagacgcaaactcaaggccaaacccagagtcagctggacaatcaggtgaatggt
cctgatgaagggcttcacaatggaggagtcgatgatgtggccaaggcgagccaactcctt
gcggagttgaacttcgaggaggatgaagaagacacctattacatcaaagacctcccactg
catgcctgcagttactgtggcatccatgatcctgcatctgtggtgtactgcaacacaagc
aagaagtggttctgcaatggacgtggcaatacttctggcagccacatagtgaaccacttg
gtgagagccaaatgcaaagaggtgactctgcacaaagatgggccactgggcgagacggtg
ctggagtgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatccccgccaag
gccgactcggtggtggtgctgctgtgcaggcagccatgtgccagtcagagcagcctgaaa
gacatcaactgggacagctcccagtggcagccactgatccaggaccgctgcttcctgtcc
tggctggtgaagatcccctcagagcaggagcaactccgggcccgccagatcacagcccag
cagatcaacaagctggaggagctctggaaggataatcccacggccactctggaggacctg
gagaagcccggcgtagacgaggagccccagcatgtgctgctgcgctatgaggatgcctac
cagtaccagaacatcttcggccccctcgtcaagctggaagctgactacgacaaaaagctt
aaagagtcccagacccaagataatataacagtcaggtgggacctggggctaaataaaaag
cggattgcctatttctccttgcccaagacggattcaggtgacatgcggctgatgcaagga
gatgagatatgtctgcgctacaaaggagagctggccccactctggaagggcatcggccat
gtcatcaaagtcccagacacaccctttgtgaaagactatggagatgagattgctatagaa
ttgcgcagcagtgttggagctcctgtggaaataccccacaacttccaggtggattttgtg
tggaagtccacttcctttgacagaatgcagagtgccctgaagacctttgctgtggacgag
acatccgtgtcaggctacatctaccacaagctgctgggccacgaggtggaggatgtcatc
atcaagtgtcagttgcccaaacgcttcactgcacagggcctgcctgacctcaatcactct
caggtgtatgctgtgaagactgtgctgcagagacccctcagtcttatccaaggccccccc
ggcactgggaaaacggtcacctctgccaccatagtgtaccacctcgccaggcagggcaat
gggcccgtgctggtgtgtgctcccagtaacatcgcagtggaccagctgactgagaagatc
cacatgtctggcctgaaggtagtcaggctgtgtgctaaaagcagagaagccattgactcc
cctgtctccttcctggccctgcacaaccagatccgcaacatggacagtatgccagagctc
cagaagctgcagcagctgaaggatgagaccggggagctgtcgtccgctgacgagaagcgc
taccgggccctgaagcgcaccgctgagagagagctgctcatgaatgcagatgtgatctgc
tgtacctgtgtgggggcaggagacccccgtctggccaagatgcagttccgctccatccta
atcgatgagagcacccaggccaccgagccagagtgcatggtgcccgtggtcctgggtgcc
aagcagctcattctggtgggagaccactgccagctgggcccagtagtgatgtgtaagaag
gcagccaaagcaggcctgtcccagtctttgtttgagcgtctggtggtgctgggcatcagg
cccatccgtctgcaggtgcagtaccgcatgcacccggccctcagtgctttcccctccaac
atcttctacgagggctccctgcagaacggagtcactgctgctgaccgcatcaagaaaggc
tttgacttccagtggccacagccagacaaacccatgttcttctatgtgactcaaggccag
gaggaaatcgctagctctggaacatcctacctgaacagaactgaggcagctaatgtggag
aagatcaccaccaggctgctgaaggctggagccaagcctgaccagataggcatcatcacc
ccctacgagggccagaggtcctacctggtgcagtacatgcagtttagcggctccctccac
accaagctctaccaggaggttgagatcgccagcgtggacgcgttccagggcagggagaaa
gacttcatcatcctgtcctgcgtccgagccaacgagcaccagggcatcggcttcctcaac
gacccgcgccgtctcaacgtggccctcaccagagccaagtatggggtgatcattgtgggc
aaccccaaggccctgtccaagcagcctctgtggaaccacctgctcaactactacaaggag
cagaaggttctggtggagggacccctcaacaacctgcgagagagcttgatgcagttcagc
aagccccgcaagctggtcaacgccattaaccctggagcccggttcatgagcactgccatg
tatgatgcccgcgaggctctcatccctgggtctgcctacgatcgcagcagcgcagggcgt
ccatccaacatgtacttccaaacccacgaccagatcggcatgattggggccgggccagcc
cacatggcagccatgaacatgcccattccattcaacttggtgatacctcccatgcctcca
ccaggctacctggcccaggctaacggccctgctgcaggccgtggtggggtgctgaagggc
aaagcggggcgtggcgggcgccagaggacccgtggaatggggaaccacagtggcagtggg
cagagcaatgggccaaacagccaggccagccaggacgtgtcttcccagcccttctcccag
gggccactcacccagggctacatcaccatgagccagccctcacagatgagccaacctggc
ctctcccagcctgaactgtcccaggacagttatctaggcgatgagttcaagtcccagatc
gacgtggccctgtcgcaggactcgacttaccagggtgaacgtgcataccaacatggtggg
gtgactggactgtcacagtactaa
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integrated database retrieval system
