Oncorhynchus mykiss (rainbow trout): 110492390
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Entry
110492390 CDS
T07259
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110492390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110492390
03036 Chromosome and associated proteins [BR:
omy03036
]
110492390
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110492390
Coactivators
SAGA/TFTC/STAGA complex
110492390
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
110492390
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
tRNA-synt_1c
USA1_C
Motif
Other DBs
NCBI-GeneID:
110492390
NCBI-ProteinID:
XP_021422336
Ensembl:
ENSOMYG00000047125
UniProt:
A0A8C7UY41
LinkDB
All DBs
Position
16:complement(57833449..57845200)
Genome browser
AA seq
959 aa
AA seq
DB search
MAAGSDLLDDVFFNTEVDEKVVSDLVGSLESELTGSGRGKSSVRVQAAANHIDNSAVGRN
SNVQDSEMGLSQELAKPGTGVPGGVINSRRSQGSTMYAAVGTTAVGSSMTAGHSPSKTGA
VSGVITEVPDHGAGIRKTGAAGVQTLNGRSVVINSHNSGSVAALVSSASSTVPAVAVVNN
GPSSVVKGNVVLPSTSSTVIQTPLMHNAVTSTVISSQLSVLNSVPTVTLVRPPMQPLGTI
TAQSGSNNTVLIRSANVAHPASSEAQINTLESPKTTTQTTSEVTSPSVVGKSLVLQNVRT
SIPSTIAACPGGIKAIAPQVFSPRLPQPQQNASNIQNIQLPPGMVLVRSESGQLLMIHQQ
TLAQMQSQSQSAMTPRAATPTSTPPVQITSVQAPGTPMMSRQVTPTITKQGSTAQTTVQA
TTTLQRPPVLQQNTIMLGGAAATSGQAPVQPCSAAVTQRAGTPVVSTMEILENVKKCKNF
LSTLIKLASSGKQSSETTANVKELVKSLLESKIEAEDFTSRLYRELNSSPQPYLVPFLKR
SLPALRQMTPDSAAFIQQSQLPHTGAQPAAPSKALTAAVLGGMSTAQNSRLNSSSPGAKG
TMHQSPVISLAQTPHNKPGLMVPQQQGAMGRPQVTLAQSPMVTLRGQPHSHIIMGQPQVV
RQLQTVPVVKQALAPGAKVPLGPQSMLSVVLKNRQKEAGGGTFKDDDDINDVASMAGVNL
SEESARILATNSELVGMVTRSCKDEAFLYTSSLTQRVHEIGGRLGVTDLGPEVISYVSHA
TQHRLQNLLEKLTVVAQQKSITFKEDDKCEQVSDVRSQLKFFEQLDQMEKQRKEEQEREI
LMKAAKSRSRQEDPEQLRLKQKAKEMQQQELNQIRQKEANMTALAAIGPRKKRKMNFPVS
GTGAEDLCSGPSPSGGYSSGGSRPQRQRITRVNLRDLLFCLENERETSRSHLLYKGLLK
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggctccgatttactggatgatgttttcttcaacacagaggtggacgagaaa
gtagttagtgatctagttgggtctttggagtctgagctcacgggatcgggtcgtggaaag
tcttcagttagggtccaggctgcagcaaatcacattgacaactcagctgtaggtcgcaat
tccaatgtccaggacagcgaaatgggactttcacaagagcttgctaaaccagggactggc
gtgccagggggggtcattaatagtaggaggtcccagggttcaaccatgtatgctgcggtc
gggacaacggcggtgggatcgagcatgacagccgggcacagtccgagcaagactggggca
gtcagtggtgtgataacggaggttcccgatcacggagctgggatcagaaaaactggggcg
gctggtgtgcaaactttaaatggaaggagcgttgtgataaactctcataattcaggaagt
gttgccgctttggtgagctcggcaagcagcacagtgcccgccgtcgcggttgtcaacaac
ggaccgagctccgtagtcaaaggaaacgtagtcttaccctcaacttccagcacagtcatt
caaacacctcttatgcacaatgctgtcacttcaactgtgatatcgtctcagctgtctgtt
ctaaacagtgtgcccactgtcacgctcgtgaggccgcctatgcaacccctcggaacaatc
accgcgcagagcgggagtaataatacggttctgatacgatctgccaacgttgcccaccct
gcaagttcagaagcgcaaatcaacacattggagtctccaaaaacgaccacacaaacgact
tcagaagtgaccagccccagtgttgtaggtaaaagcctggttttacaaaatgtgaggacc
tccatcccatcgacaattgcagcctgtcctggtgggataaaggcgatcgcgccacaggtg
ttctccccgagacttccgcaaccccaacaaaatgcttcaaacatccaaaacattcagctc
cctccaggcatggtgctggtacgcagtgagagtgggcagcttctgatgatccaccagcag
accctggcccagatgcaatcccagtcccagagcgccatgaccccacgggcagctaccccc
accagcactccccctgtccagatcacttctgtacaggctccagggacgcccatgatgtcc
cgtcaggtgacccccaccatcactaagcagggctccacggcccagaccaccgtccaggcc
accaccaccctccagaggcctcctgtactacaacagaacaccattatgctgggtggagcg
gccgccacctcaggtcaggctccagtgcagccttgctcagcagcagtcacccagagagca
gggacaccagtcgtttctaccatggagatcctggagaatgtgaagaagtgtaagaacttc
ctgtccacgctgatcaaactggcatccagcgggaagcagtcgtctgagaccacagccaac
gtcaaggagttagtcaagagcctgctggagagtaagatcgaagcggaggacttcaccagt
cggttataccgggagctcaactcctctcctcagccatatctcgtgcctttcctcaagagg
agtcttcctgcactgcgtcaaatgacccctgactcggcagccttcatccagcagagccag
ctgcctcacactggcgcccagcctgccgccccctccaaggccttgactgctgcggtgctg
gggggcatgtccacggcacagaactcccgtctcaacagtagtagccctggggccaagggg
accatgcaccagtctcctgtcatcagcctggcccagacacctcataacaagcctggcctg
atggtgcctcagcagcagggggcaatggggaggcctcaggtgactctggcccagtcaccc
atggttacgctccgaggccagccccacagtcacatcatcatggggcagccgcaggtggtc
agacagcttcagacagttcctgtagtgaagcaggctctagcaccaggagccaaggtacca
ctggggccccagtctatgctctctgtagtactgaagaacaggcagaaggaggcaggcgga
ggaaccttcaaggatgatgatgatataaatgacgtggcctctatggctggagtcaaccta
tcagaggagagtgcccgcattctggcaaccaactctgagctggtcggcatggtgactcgc
tcttgtaaagacgaggccttcctctacacctcttcactaacccagagagtacatgagata
ggcgggaggttaggggtgactgacctggggccggaggtgatcagctacgtgtcccatgca
acacagcatcgactgcagaacctgctggagaaattgacggtggtggcgcagcagaaaagc
atcaccttcaaggaggatgataagtgtgaacaggtgagtgatgtgcgatcacagctgaag
ttctttgagcagctggatcagatggagaaacagaggaaggaggagcaggagagagagatc
ctgatgaaggcagctaagtctcgatcacgacaagaggacccagagcagcttcggcttaaa
cagaaggctaaagagatgcagcagcaggaactgaatcagatcaggcagaaggaggccaac
atgacggccctggcagccatcggccccaggaagaaaaggaaaatgaacttccctgtcagc
ggaaccggggctgaggacttgtgctctggtccctctccgtcaggtgggtacagtagcgga
ggctccaggcctcagcgccagcgcatcacccgggttaacctcagggacctgctcttctgt
ctggaaaatgagagggagaccagccgctcacacctgctctataaaggcctcctcaaataa
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