Oncorhynchus mykiss (rainbow trout): 110492565
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Entry
110492565 CDS
T07259
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110492565 (ddx20)
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110492565 (ddx20)
Spliceosome [BR:
omy03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
110492565 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
HypF_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
110492565
NCBI-ProteinID:
XP_021422641
Ensembl:
ENSOMYG00000033653
LinkDB
All DBs
Position
16:complement(66269637..66276483)
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AA seq
835 aa
AA seq
DB search
MASSMKKAAHDIETRKRTDDVVLSGGIDFNALLLSQPVLDGLAASGFKKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFSAIALDSLVMENTTTQVLVLAPTREIAVQIHSVVMAIGS
AMEGLQCHVFIGGTPVSQDKISLKKCHIAVGSPGRIKQLIELGLLVTASIRLFVLDEADK
LLEEGSFQDQINWIFSSLPVNKQMLALSATYPESLAQHLAHYMREPTFVRLNPSDPGLIG
LKQYYRLVHSHAMPHKVFEEKVLLLLELFSKVPFNQALVFSNLHTRAQHLADILSSKGLP
AVCISGSLSQDQRMEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTHGLAVTYCCHGEEENKMMAIAQKCNLILCALPDPIEPGLMQEPCDWDITV
EALTPGTNSQVFPKTERRRRAKTESPAPKPIRDQDPSPVHPESTEPSRPCKSQHTASPVA
KAGLKHKNASPALDVLLPPPKASVVPGASLALSRKEQQDALPKIPPLSAFKSQRSGIMTF
QEAELDFQSFIREGLGRTVEVIRQFRGHGDDGEGFNGQHGYEESHTLQDDDVPLTHTHMT
RNGERPPTPTQLLLKTNSDPSPSESTSDGSSSDCDMEEDRQADESTQSSTDQTRGAEHKP
IVPIQTQSAQQSTVMDGARKPKCTPPRSQPNSPSVPHPSHHRSPRPEGRAVSTNPGEGEP
LLWKAKGREATAQQWSRETAKKVKGEKRDILEERKMPENRGSERKRDRVSEVEQEEDDGE
GYEGYWRAYYRAWEDYYASMPPSHHQGYHGYHSMASSWMAAYRMNSVYMEELLKH
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcaatgaagaaggctgcccacgatattgaaacgcgaaaacggactgatgat
gttgtcttgtcgggcggtatcgacttcaacgccctgttgttgtcgcagcccgtgctcgat
ggactggcggcttctggattcaagaaaccgtctccaatccagctcaaagccattccgttg
gggcgatgcggactcgatctgatagtgcaggccaagtctggcacagggaagacctgtgtg
ttctctgccatcgccctggactctctggtaatggagaacactacgacacaggtgctggtg
ctagccccgacccgtgagatagcagtgcagatccactctgtggtgatggctataggcagt
gccatggagggcctgcagtgtcatgtcttcattggggggacgcccgtcagccaggacaag
atcagtctcaagaagtgccacatcgctgtgggatcaccaggacgtatcaagcagctgatt
gagctgggtcttttggttaccgccagcatccgtctgtttgtgctggacgaggctgacaaa
ctactggaggaaggcagcttccaggaccagatcaattggatattctcctctctaccggtc
aacaaacagatgttagccctgtctgccacctacccagaatcccttgcccagcacctggcc
cactacatgagagagcccaccttcgtcagacttaacccctccgaccccggactcataggt
ttgaagcagtactacaggctggtgcactcccatgccatgccccataaggtgtttgaggag
aaggttctgctcctgctggagctgttcagtaaagttcccttcaatcaagctctggtgttc
tccaatctgcacaccagggctcagcatttagcagacatcctgtcctcgaagggccttcct
gctgtctgtatctcaggtagtctgagtcaggaccagcgaatggaggccatgtctaaactg
aagcagtaccagtgtagagtactcatctctactgacctgacctccagaggtatagatgct
gagaaggtgaatctggtgatcaacctggatgttcctcaggactgggagacctacatgcac
cgtataggacgagccggacgctttggtacacacgggctggcagtgacctactgttgccat
ggcgaggaggagaacaagatgatggccatcgctcagaagtgcaacctaattctttgcgct
ctaccagaccccatagagccagggctgatgcaggagccctgtgactgggatatcactgtg
gaggccctgacaccagggacaaattcccaggtgttccccaagacagagcgaaggagacgg
gctaagaccgaatccccagcccctaaacccatcagggatcaggaccccagccctgtccac
ccagagagcactgaacccagccgaccatgtaagagccagcacacagccagtcctgtggct
aaggctggtctgaagcacaaaaatgcatcccctgccctggatgtcctcctaccccctccc
aaggcttcagtagtccctggggcctccctagctctctcccgtaaagagcaacaggatgcc
ctgccaaagatccctccgctcagcgccttcaagagtcaaaggtcagggatcatgaccttc
caggaggcagagctggacttccagagcttcatcagggaggggctgggaaggaccgtggag
gtcatccgacagttcagaggtcacggagacgacggcgagggatttaacggtcagcacggc
tacgaggagtctcatacactccaggatgacgatgtgccactcacacacacacacatgaca
cggaacggagagcgtccaccaacacccacacagctgcttctaaagacgaactctgacccg
tcaccttcggagtcgacttctgatgggtccagctctgactgtgacatggaggaagaccgg
caggctgacgagtcaacgcagagctccacagatcagaccagaggagctgaacacaaacca
atcgttccgattcaaactcaatctgcacagcaatccacagtcatggatggggcaaggaaa
ccaaagtgtacgccacctagaagccaacccaactcaccgtctgtaccccatcctagccac
cacagatcccccagaccagaggggagagctgtgagtacaaaccccggggagggggaacct
ttgttgtggaaggcaaagggcagagaggctacagcacagcagtggagtagggagacggct
aagaaagtcaaaggggagaagagagatattttagaggagaggaagatgcctgagaatcga
gggagtgagaggaagagggacagagtgagtgaggtagagcaggaggaggatgatggtgag
ggttatgagggctactggagggcctactacagagcttgggaggattactacgcctccatg
cccccctctcaccaccagggttaccatggctaccacagtatggcgtccagctggatggct
gcctaccgtatgaactctgtgtacatggaggaactgttaaaacactaa
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