KEGG   Oncorhynchus mykiss (rainbow trout): 110492698
Entry
110492698         CDS       T07259                                 
Name
(RefSeq) transcription factor Sox-18-like
  KO
K09270  transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:omy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:omy03000]
    110492698
Transcription factors [BR:omy03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    110492698
SSDB
Motif
Pfam: HMG_box Sox17_18_mid HMG_box_2 HMG_WDHD1
Other DBs
NCBI-GeneID: 110492698
NCBI-ProteinID: XP_021422830
Ensembl: ENSOMYG00000010937
LinkDB
Position
16:76164892..76168083
AA seq 520 aa
MDISESSFCCEASSLPGQDGTGQRPWVSSPSPGPDRGLRPFDKTPLSEGSGDCGPAGSRK
EAGTGAPGSGPWTGAGSPDSTHPGAPSLGSGEGKPGGESRIRRPMNAFMVWAKDERKRLA
VQNPDLHNAVLSKMLGQSWKALTTLDKRPFVEEAERLRLQHLTDHPNYKYRPRRKKQAKK
LKRVEPGLLLHSLAQGETGEVYGHPQDSYVHPGHHHPHHHLLPPLVHFRDLHSGDLESYG
LPTPEMSPLDVMEETGGDGGVFFPPHMQEDTGPHGAWSNYHHYNKHHHHNPHNPHSNHPR
SFSQSQGHSQGHSGHDHHLSQRGSLLCRRPQEKYLSLPPEPTNSPSLYSNPQGSSISLSE
QVKPHRSISSSSVSSGYYSYLYSSSGSDTNQSSHFTSHLGQLSPPPESLSLAPTSNPLAP
QSLDSIRDQPGHGSLGPTSTEFWTEVDRHEFDQYLSASRTRTEEHGGTLVPVSNSLERYG
GGAIALRRSPVACEESQNSPLISLLSDASSVVYYSTSITG
NT seq 1563 nt   +upstreamnt  +downstreamnt
atggatatatctgagtctagtttctgttgtgaggccagttctttgccaggccaggatgga
accggtcagcgtccatgggtgtcttcccccagcccgggtcctgatcgtgggctaagaccc
ttcgacaagacccccctctctgaaggatctggagactgtggccccgctgggtcccgtaaa
gaggccggtacaggagccccagggagtggaccatggacaggggcaggtagtcctgactcg
acccacccaggagcaccttccttgggtagcggagaagggaagccagggggtgagtcgagg
atccgtcggcccatgaacgccttcatggtgtgggctaaagacgagaggaaacgactggct
gttcagaacccagacctccacaatgctgtcctcagcaagatgctgggtcagtcgtggaag
gccctgactactctggacaagcgtcccttcgttgaggaggccgagagactccgcctccag
cacctgacggaccaccccaactacaagtaccgcccccgtcgcaagaaacaggccaaaaag
ctcaaacgggtggaaccggggctactgctccacagcctagcccagggagagacaggggag
gtctatggacacccacaggatagttatgtacatccaggccaccatcacccccatcaccac
ctcttgcctcctctcgtccactttagggaccttcactcaggggacctggagagctacggc
ctgcccacaccggagatgtcccccctggatgtgatggaggagacaggaggggatggaggg
gtgttctttccccctcacatgcaggaggacacgggcccgcatggcgcttggagtaactac
catcattataacaaacaccatcaccacaaccctcacaaccctcacagtaatcacccccgt
tcttttagtcagagtcagggtcatagtcaggggcatagtggtcatgatcatcatcttagc
cagaggggctccttgctctgtcgtcgtccccaggagaagtacctcagcctgcctccagag
cctacgaactctcccagtctgtactctaacccccagggctcctctataagcctgtctgag
caagtcaaacctcatcgttctatcagtagttcctctgtttcctctggttactatagttac
ctgtatagtagctctggatcagacaccaaccagtcatcccacttcacctctcacctgggg
cagctctctcccccacctgagtccttatccctggcccctacatccaaccccttagccccc
cagtccctggactctatacgggaccagccaggccatggttccttaggtccgacgtcaaca
gagttctggacagaagtggatcgacatgagtttgaccagtacctcagtgccagccggact
cgaacggaggagcatgggggtactctcgtccctgtttctaattctttggaacggtacggg
ggtggagctatagccttgaggaggagccctgtcgcctgtgaggagagccagaacagtcct
ctaatttcacttctgtctgatgctagtagtgtcgtctactacagtacctctatcactggc
tag

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