Oncorhynchus mykiss (rainbow trout): 110492698
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Entry
110492698 CDS
T07259
Name
(RefSeq) transcription factor Sox-18-like
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110492698
Transcription factors [BR:
omy03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
110492698
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
110492698
NCBI-ProteinID:
XP_021422830
Ensembl:
ENSOMYG00000010937
LinkDB
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Position
16:76164892..76168083
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AA seq
520 aa
AA seq
DB search
MDISESSFCCEASSLPGQDGTGQRPWVSSPSPGPDRGLRPFDKTPLSEGSGDCGPAGSRK
EAGTGAPGSGPWTGAGSPDSTHPGAPSLGSGEGKPGGESRIRRPMNAFMVWAKDERKRLA
VQNPDLHNAVLSKMLGQSWKALTTLDKRPFVEEAERLRLQHLTDHPNYKYRPRRKKQAKK
LKRVEPGLLLHSLAQGETGEVYGHPQDSYVHPGHHHPHHHLLPPLVHFRDLHSGDLESYG
LPTPEMSPLDVMEETGGDGGVFFPPHMQEDTGPHGAWSNYHHYNKHHHHNPHNPHSNHPR
SFSQSQGHSQGHSGHDHHLSQRGSLLCRRPQEKYLSLPPEPTNSPSLYSNPQGSSISLSE
QVKPHRSISSSSVSSGYYSYLYSSSGSDTNQSSHFTSHLGQLSPPPESLSLAPTSNPLAP
QSLDSIRDQPGHGSLGPTSTEFWTEVDRHEFDQYLSASRTRTEEHGGTLVPVSNSLERYG
GGAIALRRSPVACEESQNSPLISLLSDASSVVYYSTSITG
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggatatatctgagtctagtttctgttgtgaggccagttctttgccaggccaggatgga
accggtcagcgtccatgggtgtcttcccccagcccgggtcctgatcgtgggctaagaccc
ttcgacaagacccccctctctgaaggatctggagactgtggccccgctgggtcccgtaaa
gaggccggtacaggagccccagggagtggaccatggacaggggcaggtagtcctgactcg
acccacccaggagcaccttccttgggtagcggagaagggaagccagggggtgagtcgagg
atccgtcggcccatgaacgccttcatggtgtgggctaaagacgagaggaaacgactggct
gttcagaacccagacctccacaatgctgtcctcagcaagatgctgggtcagtcgtggaag
gccctgactactctggacaagcgtcccttcgttgaggaggccgagagactccgcctccag
cacctgacggaccaccccaactacaagtaccgcccccgtcgcaagaaacaggccaaaaag
ctcaaacgggtggaaccggggctactgctccacagcctagcccagggagagacaggggag
gtctatggacacccacaggatagttatgtacatccaggccaccatcacccccatcaccac
ctcttgcctcctctcgtccactttagggaccttcactcaggggacctggagagctacggc
ctgcccacaccggagatgtcccccctggatgtgatggaggagacaggaggggatggaggg
gtgttctttccccctcacatgcaggaggacacgggcccgcatggcgcttggagtaactac
catcattataacaaacaccatcaccacaaccctcacaaccctcacagtaatcacccccgt
tcttttagtcagagtcagggtcatagtcaggggcatagtggtcatgatcatcatcttagc
cagaggggctccttgctctgtcgtcgtccccaggagaagtacctcagcctgcctccagag
cctacgaactctcccagtctgtactctaacccccagggctcctctataagcctgtctgag
caagtcaaacctcatcgttctatcagtagttcctctgtttcctctggttactatagttac
ctgtatagtagctctggatcagacaccaaccagtcatcccacttcacctctcacctgggg
cagctctctcccccacctgagtccttatccctggcccctacatccaaccccttagccccc
cagtccctggactctatacgggaccagccaggccatggttccttaggtccgacgtcaaca
gagttctggacagaagtggatcgacatgagtttgaccagtacctcagtgccagccggact
cgaacggaggagcatgggggtactctcgtccctgtttctaattctttggaacggtacggg
ggtggagctatagccttgaggaggagccctgtcgcctgtgaggagagccagaacagtcct
ctaatttcacttctgtctgatgctagtagtgtcgtctactacagtacctctatcactggc
tag
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