Oncorhynchus mykiss (rainbow trout): 110492879
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Entry
110492879 CDS
T07259
Name
(RefSeq) endothelial PAS domain-containing protein 1-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04137
Mitophagy - animal
omy04140
Autophagy - animal
omy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110492879
04137 Mitophagy - animal
110492879
04148 Efferocytosis
110492879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110492879
Transcription factors [BR:
omy03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
110492879
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Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_11
PAS_3
bHLH_HIF1A
PAS
PAS_4
PAS_9
Motif
Other DBs
NCBI-GeneID:
110492879
NCBI-ProteinID:
XP_036802045
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All DBs
Position
16:11952562..11958858
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AA seq
428 aa
AA seq
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MTPERERRRIMSCEAARARRRAESQVLIDMSQLLPLPSSLRPQLDKPSIIRLTISYLRIH
TLLSGTHTHTHTHFLSHSLTNKQTNTHTQSCCLCLFILGFADRQTWERRDEEGERETREE
GERETRERREEGGRERWAEGNREAGDRELGERSEERKKEMGETDLYLRILGGFVVVVTTE
GDMIYLSDNIREYMGLTQVELMGHSIYDFTHPSDHEEIRDNLDLTAGRSGCGGLRDFLMR
MKCTVTHRGRTVNLRSAGWRVLQCRGCLKVCVSGPSLTCVLFTCQPLSLTHTLLHTHTFT
SHHSMDMRFTYCDQRVTGLLSYRPEELLGVSMYDLCHTLDLHTLTKSHLNLCSKGQSVSG
VYRVLVRGGGYMWAETHSAVISKPRPTQPHPSQPHQSRPSPPLFVACVTYILSGVEEPTQ
LLSLGQMN
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaccccggagagagagaggaggaggataatgagttgtgaagcagcgagggctaggcgg
agagcagagtctcaggtgttgattgacatgtctcaactcctccctctcccttcctccctc
cgcccacagctagacaaaccctccatcatacgactaaccatcagctacctacgcatacac
acactgctctctggtacacacacacacacacacactcactttctctctcactcactcaca
aacaaacaaacaaatacacacacccagtcatgttgtttatgtctctttatcctaggcttt
gctgaccgacagacgtgggagaggagggacgaggagggagagagggaaacgagggaggag
ggagagagggaaacgagggagaggagggaggagggagggagagagaggtgggcggaggga
aatagggaggcgggagacagggagctcggggagaggagcgaggagcgaaagaaggagatg
ggggagacagatctatacctgaggattctgggtggctttgtcgtcgtggtaacgacagaa
ggagacatgatctacctgtcagataacatcagagaatacatgggtttaactcaggtggag
ttgatggggcatagcatatatgatttcacacacccctctgaccatgaggaaatcagagac
aaccttgacctcactgcagggcggagcgggtgtggaggactgagagactttctgatgagg
atgaagtgtacagtgactcacagaggaagaactgtcaacctcagatcagccggctggagg
gtgctgcagtgtcgcgggtgtttgaaggtgtgtgtgtcaggaccctctcttacttgtgtg
ctcttcacctgccagcccctgtccctcacacacacactcctacacacacacaccttcacc
agccatcacagcatggacatgaggttcacttactgtgaccaaagggtgactgggttgtta
agttatcgtccagaggagttgctgggtgtctctatgtatgatctgtgtcacactctggac
ttacacactctgaccaaaagccacctgaacctgtgttctaagggtcagtcagtgagtggg
gtgtacagggtgttggttagagggggagggtacatgtgggcagagactcacagtgctgtc
atctccaaaccccgcccaacgcagccacacccatcacagccacaccaatctagaccctca
ccgccactcttcgtcgcttgtgtcacatacatcctcagtggtgttgaagagccaactcag
cttctgtctctgggccagatgaactga
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