Oncorhynchus mykiss (rainbow trout): 110493231
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Entry
110493231 CDS
T07259
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
110493231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
Kunitz_BPTI
VWA_2
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
DUF4992
VWA_3
fn3_2
Motif
Other DBs
NCBI-GeneID:
110493231
NCBI-ProteinID:
XP_036806263
LinkDB
All DBs
Position
17:61353485..61458471
Genome browser
AA seq
3146 aa
AA seq
DB search
MKMWCWVFPLAFLLSSVHQAEAQGRCNNVGPADIVFLIDGSSSIGRANFLQVKGFMAGIV
KPFTSSVGQSGIRFGAVQYSDTSRVEFTFTTYLNGTELVSAVENLNYKGGNTRTGAGLKF
VADNFFNPTSIRNVSKVCILITDGKSQDSVSDPAQKLRSLGVEMFAVGIKSADQTELALI
ATPPQRDYTFFVGDFKLLNTLLSLVGPRVCSSSGGVYASDDAFSGPSNLQFSSQTSDSLR
FRWTPAGGPVTGYVVQYTPLSGLGQPITAELRQETVFANQRSFVARELKSGTDYLVTVIA
QYPNSVGEPVSAKARTNSLPGVSGLRLVQAGFFSLSLTWDAPTSQFQGYRLTYGPRGQPK
AQLLEQSLAADSTSVTLERLLPDTEYVLTLYPLFPRNSASPATLTSRTLRLEAAQQLSVD
TVSERSVRVLWRGVGGARAYRLVWGPFTGRDVESVEVAGDSETHTLLNLQPDTEYIVTVI
ALYEGNTEGPGATTRFKIESLEQQVLRAATTGPSSIRLTWNLIQSARGYRLEWRQGEGGR
MQSQSFSRNTTIYDLSGLQPSTEYVITLFTLYEGREEATPVSTSPTVEQPVGRVSNLRVV
EYLGSTVRLGWTGVAGATQYRILMVNTEAQTEETRSIPGSQTTLDLRGLTEGVSYGVSVT
AVVGDSEGDPVTVYIKSEQALERVTNLRVTNTNGRRLRIAWTGVSGATGYRVTWRQGNNA
EQSRVLGPEASSYTVEGLQPDTAVVLGVAAVIGQRIGEVVTLSARTNGNNGSSTVSGLRI
IDVTSQRIRITWSPVSRATGYKITWRSGNGVESSRTVAADVTSFTIDSLQEDSSYRVSVS
SLIGSREGYPTSLNTRTESDQLVVGTVTSLKAQESRGEVVRVTWVGVQGATAYRVAWKRI
DGGEERSQLVGGDRTAVDLEQLDPGAQYEVQVMALVQNREGSPVSVRVTTPGEPVAVDRV
EGVRVLEATPRVLRLVWRGMAGVTGYRIYWRSALGEAESSRLIGRDATSFDLDGLRPGVS
YTMRLAAIFRDRESQAVTITASTAPLQPVTGLRVAEVTQNSVLLGWVPLTGATGYILRWK
EERDTGPGQSTTLPGSSSSYRVTGLRLGLRYRFTLQPNFQREVGPETSVDERTVCVGGRL
DVVFLVPASRDRASLADSLLSLLTSAAGSLTTIGERDSQLGIVVYSARPKVWFLLNRHSN
SETLLQEILSTPFEDGPGNAIGQAMTFTRQFLLSPTAGRRPRVPGAVVIIADEKSSDNIT
VPASVVKASGVTVLAVGIGRADSEELRQAVTDGSTQNLLYARDATQLGTLHADLADLLCG
VARIPEGVGPVTEQCTVQCPRGDRGERGGKGESGRDGADGRKGEPGRDGLPGREGPRGPE
GRQGQPGRSEDPSVGVRGEKGERGFPGLDGNPGLPGRPGTPGPGGVPGSQGLPGVRGDPG
DPGVTGTPGTKGDRGDRGEPGSAVSGGGLPGRKGEPGIPGIPGTLGRPGNDGAKGFVGPA
GTPGQDGRPGIPGTPGLSIKGDKGSTGERGPPGVGSGLAVKGEKGSPGSNGNPGAQGLRG
STGQQGAKGDKGESAEGLPGLAGKAGEPGDRGPRGPAGSIGLKGDRGQPGEPGSQGDRGE
RGLAGLAAERGETGQPGSTGAPGLRGLPGTSGLPGEKGSEGAKGEPGRSGPGLGGKKGEQ
GEPGLPGPEGPRGQKGDPAQKGEKGSPGTGSPGQAGSKGEQGDRGLSGLAGRLGIKGDSG
EPGERGETGRAGPAGKNGIPGKEGAKGDKGDEGTPGESGLPGKAGERGLRGLAGQPGRAG
EKGDLGDPGEHGRNGSPGPIGPRGEKGVEGAQGRPGPPGKVGDTEQKLKGERGEKGDAGD
PGEHGGKGQKGEAGSSGAAGLRGLEGQRGPPGSRGDTGERGGPGEKGERGASGLDGRNGL
DGKPGAPGTAGLRGDPGKLGDPGRDGLPGLRGVQGLPGPIGPAGNPGTPGKAGEDGKPGT
AGKMGEDGVPGEDGRKGDKGEAGVSGRDGRDGLKGDRGLGGPAGPTGLSGPQGVPGTIGP
PGQVVYAKGAPTPSIPGPQGPPGSPGVPGIPGTAGARGERGAVGSKGERGDPGEDGQPGR
PGTAVDVQKALSNLGIEMQDLKVLVDNGNVPGKSVQEKAEKGQRGDKGEAGQRGPAGIDG
ARGLSGERGVKGEQGERGPVGATGPTGRAIGEKGPVGPTGQAGEPGKPGIPGVPGRAGEL
GEAGRPGDKGERGEKGDKGEAGKNGLGGSVGPPGPKGAAAVAGEAGLPGARGLPGVTGPK
GEPGASGPQGSKGDRGIAGLRGDKGDRGPSGEQGRDGFQGTAGEPGKPGQDGKPGLPGFP
GVLGRPGNSGEPGIIGPTGPIGTNGPPGPSGVKGNQGVPGVGVQGLPGPEGNMGVRGPAG
PPGAVGPSGPPGLPGQTGEGGKPGVPGRDGIPGKEGTPGLPGKQGIAGPMGSAGLKGEQG
DSGPPGKAVAGPPGLKGAQGPPGVTLPGTVGESGLPGLRGERGDKGPAGIKGDRGAAGEN
GEPGEDGGRGPAGPKGDRGERGIGLAGPPGQLGPQGLNGDTGLPGPAGPPGAQGVAGTPG
LAGLRGENGTPGPPGPLGPRGIQGFTGQTGTPGAPGPPGPPGLAGSPGTVGGKGDKGAIG
AGVPGLRGERGDPGPRGEEGRGGQNGERGLAGSPGGKGGRGDKGELGLQGGKGEKGDTLL
VGGPPGEKGNKGETGDRGPKGVQGEKGLKGNDGPAGEQGLRGEPGDRGSTGFQGARGPGG
QKGEAGQPGVPGESGTPGKDGMPGFRGDKGDVGITGMRGIKGDRGSKGACGSDGPKGEKG
DSGIHGRSGLPGRKGEQGDLGPPGAIGTPGKEGLIGPKGDRGIDGVLGPKGTQGEKGERG
PSGIPGPPGPTGVDGASGLTGPQGPAGAKGPEGLQGQKGERGPIGPAKIGPRGIPGIPGE
RGGQGELGLDGAKGDRGEPGLTEDEIRAYVRTEMSQHCACGGIVVTETLPSPRVRPAPEQ
QLARKGKQGKDGRELRVVVNTNDPDYEHFYSIESYDEPMAMEQSIHLTPTANQSHGERVT
VDPLKTKRPRREVKGEAPVDPCVLPIEEGNCGRFTLRWYFNSQVQACRPFIYSGCEGNAN
RFLQQETCEERCLGEDRGAIPLKKGR
NT seq
9441 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgtggtgctgggttttccccctggcgttcctgctgtcctcagtgcaccaggct
gaagcccaaggcaggtgtaataatgttggaccagcagacatagtgttcctgatagatggc
tcgtccagtatcggcagggccaacttcctgcaggtcaagggcttcatggccggtatcgtc
aagcccttcaccagctccgtgggccaatcagggatccgcttcggcgctgtgcagtacagc
gacacctcaagagtggagttcaccttcaccacatacctgaatggcacagagctggtcagc
gctgtggagaacctcaactataagggaggcaacactcgcaccggtgctggcctcaaattt
gtcgctgacaacttcttcaaccccacctccatccggaacgtctcaaaggtctgtatactg
atcacagatgggaagtctcaagacagtgtaagcgacccagctcagaagctacggagtctg
ggagtggagatgtttgcagtgggtataaagagtgcagaccagactgagttggctctgata
gccactcctcctcagagagactacacattctttgtgggggactttaagttgcttaacaca
ctgctctccctggtgggcccgcgtgtttgttccagctctggtggagtgtacgctagcgat
gatgccttctccggtccctctaacctccagttctcaagccagacctctgattcgctcagg
ttccggtggactcccgcaggggggcctgtgactggctatgtggtgcagtacacgcccctc
tctggccttggccagccaatcacagcggagctgcgtcaggagacggtgtttgcaaatcag
aggagcttcgtggctagagagctgaagtcagggacagactacctggtgacggtcatcgcc
cagtatcccaacagtgtgggagagcctgtgtccgccaaggcaagaaccaactcgctaccg
ggggtgtccggtcttcgtctggtccaggctggtttcttctctctctctctgacctgggac
gctcccacctcacagttccagggctaccgactcacctatggtccccgaggtcagcccaag
gcccagctattggagcagtctctggctgcagactctacttctgtcaccctggagaggcta
ctgcctgacacagaatacgtcctcaccctctacccgctgttcccccgaaactctgcctcc
cccgccaccctcacctcacggacattgcgtctagaagcggcccagcagctgtcagtggat
actgtgtcagagcgtagtgtccgggtgttgtggagaggagtgggtggagccagggcctac
agactggtctggggaccattcaccggtcgtgatgtggaatctgtggaagtggctggtgac
agtgagactcacaccctgttgaacctgcagccagacactgagtacattgtcactgtcatc
gctctctacgaaggcaacacagagggtcctggtgctaccaccaggttcaagatagagagt
ctggagcagcaggtgctgagggcagccaccaccgggccctcctccatccgcctcacctgg
aacctaatccagtctgccaggggataccgcctggagtggaggcagggggaaggtggcaga
atgcagagtcagtcattctccaggaacaccactatttatgatctgtcagggctgcagccc
agcactgagtatgtcatcaccttgttcaccctgtatgagggacgagaagaggccaccccc
gtctccacctctcccacagtggaacagccggtggggagggtgtccaacctgcgagtggta
gagtacctgggcagcactgtgcgactgggatggacaggggtagccggggcaacacagtac
cgtatcctcatggtcaacactgaagcgcaaacagaggaaacccgcagtatccctggaagc
cagacgacccttgaccttaggggtctgacagagggcgtgtcttatggggtcagcgtgaca
gctgtggtgggagacagcgagggggacccagtcactgtctacatcaaatcagaacaagca
ttggagagagtgacaaacctgcgtgtgacaaacaccaatggtcggcgactccgaatcgcc
tggacaggggtttccggggcgacagggtacagggtcacttggagacaaggcaacaatgcg
gagcagtcccgtgttctggggccagaggcctcgtcctacacggtggaggggctgcagcca
gacacagctgtggtcctgggcgtggcggctgtgattggtcaacgtatcggggaggtggtc
accctctcggccaggaccaatggcaacaacggctcaagcacggttagcggcctgcgtatc
attgatgtcacctctcagaggatacgcatcacatggtcaccagtctccagggcaactggc
tacaagattacctggcgcagtggaaatggagtggagtcctcccgcacggtggccgctgat
gtcacttccttcaccatcgacagccttcaggaagactcctcctaccgagtctcagtctcc
tcactgattgggtctcgggaaggataccccacctccctgaacaccagaacagagtcagac
cagttggtggtgggaacagtgacttcactcaaagcccaagagtcccgcggtgaggtcgtc
agagtaacatgggtgggcgtgcagggagcgacagcctatcgtgtggcttggaagcgaatt
gacggtggggaggagaggagccagctggtaggtggtgaccgcacagcggtggacctggag
cagctggacccaggggctcagtatgaggtgcaggtcatggccctggttcagaacagagag
ggatccccagtctctgtcagagtcacaacacctggggaacctgttgctgtggaccgtgtg
gagggggtcagggtgctggaggctaccccaagggtgctgcgtctggtctggagaggaatg
gctggggtcacagggtaccgtatctactggagatcagccctgggtgaggctgaatcgagc
cgtctgataggtcgagatgcgacctcgtttgacctggatggtctgcggcctggggtgagc
tacacaatgaggctggctgccatcttcagggacagagagagtcaagctgtcactatcaca
gcctccacagctcccctacagcctgtaacaggtctgcgtgtggcagaggttacccagaat
tctgtgttgttaggctgggttccactgactggtgccacaggatatatcctgcgctggaaa
gaggagagagatactggtccgggtcaatccaccacgctgcctgggtcatccagctcctac
agggtgacagggctacgtctgggtctgagataccgcttcaccctgcagcccaacttccag
agggaggtgggccctgagacctcagtggacgaacgcactgtgtgtgtgggtggtcgtctc
gacgtggtattcctggttccagcttccagggaccgggccagcctggctgattctctgctc
tccctcctgaccagcgctgctggctccctcaccaccattggagaacgggactcacagctg
gggattgtagtgtacagcgcccgacccaaggtctggttcctgctaaatcgccatagcaac
agtgagacgctgcttcaggagatcctgtctacgccttttgaggatggcccagggaatgct
ataggccaggcaatgacgttcaccagacagttccttctcagccccacagctggtcgtaga
cccagagtccctggtgcggtggtgatcattgcagatgaaaaatcctccgacaacatcact
gtcccagccagtgttgtcaaagcctcaggagtgacggtgctggcggtgggtataggtagg
gcggactctgaggagctgcgccaggccgtgacagatggcagcacccagaaccttctatat
gcccgtgatgccacccagctgggcaccctgcacgccgacctggctgacctgctgtgtggc
gtcgccaggataccagagggagtggggccagtgacagagcagtgtaccgtacagtgtcct
cggggtgaccggggggagcgaggaggaaagggagagagtggaagagacggtgctgacgga
cgcaaaggagagcctggtcgtgatggtttgcctggcagggagggccccagagggcctgag
gggcgacagggtcagcctggccgaagtgaggacccctcagtgggggtcagaggggagaag
ggggagagggggtttcctggtctggatgggaatccagggttgccagggcgaccagggacc
ccaggccctggaggtgtgccgggttcacaggggctaccgggtgtcagaggagatcctggt
gatcctggggttacaggaacaccagggacaaagggtgacaggggcgacaggggtgagcca
gggtcagctgtttcaggaggaggtctgcccgggaggaaaggggaaccagggatcccagga
ataccaggtaccctagggcgtccagggaatgacggggccaagggctttgtgggacctgca
gggacccctggacaggatggtcgcccagggataccaggcacccccggcctctccattaag
ggagacaagggcagcaccggagagaggggacctccaggagtgggcagtggcttggctgtg
aagggggagaagggatcaccggggtctaatggaaacccaggagctcagggtctcagagga
tctacaggacaacaaggagccaaaggagacaagggggagagtgcagaggggttgccagga
ctggctgggaaggcaggagagcctggtgatcggggtccccgtgggcctgctgggagcatt
ggactcaagggggaccggggccagccaggtgagcctggatcacaaggtgacaggggggag
agaggacttgctggcttggcagcggagaggggggagactggacagccaggctctacaggg
gctccaggcctgaggggtttgcctggcaccagtggattaccaggagagaagggcagtgag
ggcgctaaaggagaacctggccggagtgggccaggattaggtgggaagaaaggtgaacag
ggtgagccgggtctgccaggtccagaggggcccaggggccagaagggcgatccagcccag
aaaggtgaaaaaggttccccaggtactggctctcctggccaggctggatctaaaggagag
cagggggatcggggactctctggcttagctggaagactggggatcaagggggattcaggt
gaaccaggagagagaggggagacaggacgagccggacccgcaggaaagaatggcatccct
gggaaagagggagccaaaggagacaagggtgacgaaggcactcccggggagtctggactc
ccagggaaggcaggggagagaggactaaggggccttgcgggtcagcctggacgagcagga
gagaagggagacctgggagaccctggagagcatggacgtaatggcagcccaggacctatt
ggaccaagaggagagaaaggagttgagggagctcaaggccgcccaggacctccagggaag
gtgggcgatacagagcaaaagcttaaaggagaaagaggagaaaagggagatgctggtgac
ccgggagagcatgggggcaaaggtcagaagggcgaggcagggtcctcaggggctgcgggg
ctccggggtctcgagggacagcgtggacctccagggtcgagaggtgacacaggagagaga
ggaggcccaggagagaagggagagagaggtgcgtctgggctggatggacgcaatggtctg
gatggcaaaccaggggcaccaggaacggccggcctgaggggagacccagggaaactaggg
gatccaggaagagatgggctgccaggactaagaggtgtacagggcctcccaggtcctatt
gggcccgctggaaatccaggcacacctggcaaagcaggagaagatggaaaaccagggact
gctgggaaaatgggtgaggatggagtaccaggggaagatggcagaaagggtgacaaagga
gaggctggggtttctggaagagacggccgtgatgggctgaagggggaccggggccttggc
gggcctgcagggccaactggtctatctgggccccaaggggtccctggcaccatcggacct
ccaggacaggtggtctatgcgaagggagctccaacaccatctatccctggccctcagggg
cctccaggaagcccaggtgtgcctggaatcccagggaccgcaggagctagaggggagaga
ggagcagtgggcagtaaaggtgaaaggggtgacccaggagaggacgggcaaccgggcagg
cctggaacagcagtggatgtgcagaaggccctctctaaccttggcattgagatgcaggac
ctgaaggtgcttgtggataacgggaatgtgccaggcaagagtgtgcaggagaaggctgag
aagggccagagaggagacaagggagaggccgggcagagaggaccagcagggatagatggt
gcccgcgggctgtctggggagaggggtgtgaagggagagcagggggaacgggggcctgta
ggggccacaggacccacagggagggccattggagagaagggcccagtaggacccacggga
caggctggagagccaggaaaacctggaatacctggagtaccagggagagccggagaactg
ggagaggctggacgacctggagataagggggagagaggagagaagggtgacaaaggagag
gctgggaaaaacgggctaggtggctcagtgggccctcctggaccaaagggtgctgctgca
gtagcgggtgaagctggactccccggagcaaggggcctccctggggtcacagggccgaag
ggagagcctggcgcctcagggccacagggatccaaaggcgacaggggtattgcagggctc
cgtggagataaaggtgatcggggtccatctggagaacagggacgcgatggttttcagggg
acagcaggagaacctggcaaaccgggacaggatgggaagccgggcctgcctgggttccct
ggagtgctgggcagaccgggaaactctggagaacctggaattatagggccaactggtccg
atcggtaccaatggacctccaggtccgtcaggggtaaagggtaatcaaggagtgcctggg
gttggcgttcagggacttcctggtcccgaaggcaacatgggagtgcgtggaccagcaggg
cctcctggagctgtgggtccatctgggcctccaggtctaccagggcagacaggggagggg
ggcaagccaggggtcccaggaagagatgggatacctggaaaagagggaacaccagggttg
ccagggaaacagggtatcgctggaccaatggggtccgcggggttgaagggggagcagggg
gacagtggccccccaggaaaggctgtagcaggaccccctggtttgaaaggagcacaggga
cctcctggtgtgaccttacctgggacagtgggagagagcgggctgccagggctacggggt
gagaggggagacaagggtcctgcaggcatcaaaggggaccggggagctgctggtgaaaat
ggggagcctggagaagatgggggcagaggaccagcagggcctaaaggagacaggggagag
agaggcatcggactggcagggcctcctggtcagctgggacctcaagggttaaatggggac
acaggtctcccgggcccagcaggccctccaggagcccagggcgtagcagggacccctggt
ctggccggcctgagaggagagaacggaactccaggacccccaggacctctaggacccagg
ggtatccaaggctttactggtcagacagggactcctggagctcctgggccacccggaccc
cctggcttagctggttcaccaggcactgttggaggcaaaggggataagggagcgattgga
gcgggagtacctggattgagaggcgagagaggagacccaggacccaggggggaggagggt
cgaggtggtcagaacggggagagaggactagcgggctctccaggtggcaaaggaggcagg
ggagataagggtgaattggggctgcaaggtggcaaaggagaaaagggtgatacactcctg
gtgggaggacctccaggagagaaaggaaataaaggagagacgggtgaccgagggcccaaa
ggggtgcagggggagaaaggcttgaaaggcaatgacggcccagctggggagcagggtctg
aggggtgagccaggagacaggggctctacagggttccagggagccagaggtccaggagga
cagaagggagaggcgggacagcctggtgtacctggagaatcaggtaccccaggaaaggat
ggaatgccaggctttagaggggataagggagacgtgggaataactggaatgcgtggaatt
aagggcgaccgaggatcaaagggggcttgtggatcagacggaccgaaaggagaaaaggga
gattcggggatccatgggaggtcagggttgcctggaaggaaaggcgaacagggagacttg
gggcctccaggggccattggaactcctggcaaggagggactgatcggccccaagggtgac
cgaggcattgatggagtactaggacccaaaggaacgcagggagagaagggcgaaaggggc
ccctcgggtatccctggccctccgggccccacaggagtggatggggcctctggactgaca
gggcctcaggggcccgctggagctaagggcccagaagggctccaaggacagaagggggag
agggggcctattggtcctgccaagattggtccacgtggtatcccaggtataccaggagaa
agaggcgggcagggggagttgggtctagatggagccaagggagacagaggagagccaggc
ttgacggaggatgagattcgtgcatacgtccgcacagagatgagccaacactgtgcttgt
ggaggtattgttgtgacagaaaccctgcccagccccagggtacgtcctgctccagagcaa
cagctggcccggaagggcaagcagggcaaggacgggcgtgagctgcgtgtagtggtgaac
accaacgaccccgactacgaacacttctactctatagagagttacgacgaacccatggcc
atggagcagagcatccacctgactcccactgccaatcagagccatggtgagagagtcact
gttgaccctctgaaaacaaagaggcccaggagagaggtcaaaggggaagctccagtggat
ccttgtgtgttgcccatagaggagggcaactgtgggagatttactctgcgctggtacttt
aacagccaggtccaggcctgccgacccttcatctacagcggctgtgagggcaatgccaac
cggttcctccagcaggagacctgtgaggagcgctgcctcggggaggacagaggtgctatt
cctttgaagaaggggcgatga
DBGET
integrated database retrieval system
