Oncorhynchus mykiss (rainbow trout): 110493289
Help
Entry
110493289 CDS
T07259
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04510
Focal adhesion
omy04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110493289 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110493289 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
omy00536
]
110493289 (col2a1b)
Glycosaminoglycan binding proteins [BR:
omy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110493289 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Frataxin_Cyay
Motif
Other DBs
NCBI-GeneID:
110493289
NCBI-ProteinID:
XP_036806788
LinkDB
All DBs
Position
17:complement(86950210..87034105)
Genome browser
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVATQVVLLAVVKCQDEDQDVGSCMQDGQSYSDKDVWKPEPCRICVCD
TGTVLCDEIICEEIKDCPKPEIPFGECCPICVRDGEAPPSGAPGAKGQKGEPGDITDVVG
PRGPGGPLGPPGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAG
SLGPRGPPGPSGKPGDDGEAGKPGKGGERGPSGPQGARGFPGTPGLPGIKGHRGYPGLDG
LKGEGGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGSAGARGNDGLSGPAGPPG
PVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGIGG
SKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGELGPAG
PQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVGG
VSGPKGAGGDPGRPGEPGLPGARGLTGRPGDTGPQGKVGPGGAAGEDGRPGPPGPMGARG
QPGVMGFPGPKGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDMGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG
ASGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAGFAG
PPGSDGQPGAKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGAAGPSGPAGKDGPKGVRGDGGPPGRQGDAGLRGAAGSPGEKG
DAGEDGPSGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDRG
PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGSTGIKGDRGNTGPAGAPGSPGANGSPG
PVGPTGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFTG
LQGLPGPPGQSGDQGASGPAGPSGSRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETG
PSGPPGNSGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVDA
TLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCNM
ETGESCVYPKPASIPKKNWWSSKSKAAKHIWFGETMNGGFHFSYGDESLAANTASIQMTF
LRLLSTEANQNLTYHCKNSVAYMDGATGNLKKAVLLQGSNDVEIRAEGNSRFTYTVMEDG
CTKHKGTWGKTVIEYRSQKTSRLPIVDIAPVDIGGADQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgtttagctttgtggattcgaggactgtactgctacttgtagcaacccaagtcgttcta
ttagctgttgtcaaatgtcaggacgaagaccaggacgtaggcagctgtatgcaggacgga
cagagctatagtgacaaggacgtatggaaaccagagccgtgtcgtatttgtgtgtgcgac
acgggaactgtcctgtgtgacgaaataatctgcgaggagattaaagactgccccaaacct
gagatcccattcggagagtgttgccccatctgcgtgcgggacggggaagctcccccaagt
ggggcccccggagctaagggtcagaaaggggaaccaggagatatcacagatgtcgtagga
ccaagaggacctggaggccctttgggccccccaggagagcagggaccacgtggagacaga
ggagacaaaggagataagggcagccccgggccccgtggcagagatggtgagcctggtacc
cccggtaaccccggcccccccggacctccaggacctaacggaccccccggccttggagga
aacttcgctgctcagatggcgggaggattcgacgagaaggctggcggagcacagatgggc
gtgatgcaaggaccaatggggcctatgggtcctcgaggaccacctggaccttctggagct
cctggcccacaaggtttccaaggcaaccccggagaggctggagagcccggatcagctggt
tcgttgggtccccgaggtccacccggaccctctggtaaacctggagatgatggtgaggct
ggcaaacccggcaaaggtggtgaacgtggaccttctggtcctcagggagctcgtggattc
ccaggaactcccggtctgcctggaatcaagggccacagaggttatccaggtctggatgga
ctcaagggagagggtggagctgctggttctaagggtgagtctggtgctcccggtgagaat
ggcgctccaggaccaatgggaccacgcggtctgcccggtgagagaggtcgtcccggaccc
tctggttctgctggcgctcgtggtaatgacggtctgtctggccctgctggtcctcctggc
ccagtcggtcctgcaggtgctccaggcttccccggctctccaggttctaagggagaagct
ggccccaccggtgctcgtggacctgagggcgcccagggaccccgtggagagtcaggaacc
cccggatctcccggacccgccggcgcttctggtaaccctggtactgatggtattggagga
tctaaaggatcagctggtgcccctggtatcgctggcgcgcctggcttccccgggccccgt
ggccctccaggaccccagggggccactggacctctcggaccaaagggaacatctggtgac
cccggtatcccaggtttcaagggtgaggctggacccaagggagagcttggaccagccggt
ccacaaggagcacttggccctgcaggagaggaggggaagaggggacccagaggagagccc
ggcgctgctggacctcttggacctcccggagagagaggcgcccccggtaaccgtggtttc
ccaggtcaggatggtctggctggtcccaagggagcccctggcgagcgtggagtcggcggc
gtgtccggccctaagggagccggcggtgaccctggtcgccctggcgagcccggtcttcct
ggcgcaagaggtcttactggtcgtcctggagatactggtcctcaaggcaaagttggacct
ggtggtgctgctggtgaggatggtcgccccgggccccctggccctatgggagcccgcggt
cagcctggcgtgatgggattccccggacccaagggagccaacggtgagcctgggaaggga
ggagaaaaggggcttcttggtgccccaggtctgaggggtcttcctggaaaggatggtgag
actggagctgctggaccacctggccctgctggccctgctggagaaagaggagagcaagga
cagcctggaccttctggcttccagggtctgcccggacctcccggcccacctggtgagggg
ggcaagcccggtgacatgggtgttccaggagagggtggagctgctggtgccactggaccc
agaggtgagcgtggtttcccaggagagagaggaggtgctgggcctcaggggctgcaggga
cctcgtggtctgcctggaactcctggaactgacggacccaagggagcgattggaccaggt
ggcgcatcgggtgcccagggaccccccggtctgcagggtatgcccggagagagaggggcc
tcaggcatccccggacctaagggagacagaggtgacaacggagagaagggacctgagggt
gcttctggcaaagacggctcaagaggtttgactggtcccattggtcctcccggcccagct
ggtcccaacggagagaagggtgaatctggtccatctggaccttccggtgctgccggtgcc
cgtggtgctcctggagacaggggtgagaccggacctcctgggcctgctggcttcgctggg
cctcctggatctgatggtcagcccggagccaaaggagagcagggagagggtggtcagaaa
ggagacgctggtgcccctggaccccagggaccctctggagctcctggaccttccggacca
actggcgtttctggacctaaaggtgctcgcggtgctcagggaccccctggtgccactggt
ttccctggcgctgccggcagagtcgggccccctggtcccaacggtaaccctggtgctgct
gggccctctggccctgctggtaaagatggccctaagggtgtgcgtggagacggtggaccc
ccaggcagacagggagacgctgggctgcgtggagccgctggatcccctggagagaaggga
gatgctggagaggatggtccctctggtcccgatggtccttcaggtccttcaggtctggct
ggacagcgtggtattgttggtcttccaggacagcgtggagagagaggtttccctggcctg
ccaggaccctctggagagcctggtaaacaaggagctcctggtggaagcggagaccgtggg
ccccctggcccagtgggaccccctggactgactggacccgctggagaacccgggagagag
ggcaacgctggttctgatggaccacctggtagagatggatccactggaatcaagggggac
cgtggtaacaccggtcctgctggtgctcctggatccccaggtgctaatggttcccccggc
cctgtcggccccaccggcaagcaaggagacaggggagaggctggagctcaaggacccgct
ggacctgccgggcctgctggagccagaggaatggctggaccccaaggaccccgtggagac
aagggtgaagctggagagggtggtgagagaggacagaaaggacacagaggattcactggt
ctgcagggtctgcccggacctcccggtcaatctggagaccagggtgcctctggacctgct
ggaccaagtggatcaaggggacctcccggacccgttggtccctctggaaaggatggttcc
aacggtatgcccggccccatcggaccccccggaccccgtggtcgctctggagagactggt
ccctctggtccacctggaaactccggtccccctggtcctcctggtcctcccggccctggt
atcgacatgtctgccttcgctggtctgtctcagcctgagaaatcccccgatcccctgagg
tacatgagggccgaccaggcctccggaaacctgaggacgcacgacgccgaggtggacgcc
acgctcaagtctctcaacaaccagattgagaacatccgctcccccgagggctccaagaag
aaccctgcacgtacttgcagagacctgaagctgtgccacccagactggaagagtggagag
tactggatcgaccctaaccagggctgcaccatagacgccatcaaggtctactgtaacatg
gagaccggagagtcctgcgtctaccccaagcccgccagcatccccaagaagaactggtgg
tccagcaagagcaaggctgccaaacacatctggttcggagagaccatgaacggaggattc
cacttcagctatggcgatgagagtctggcagccaacacggccagcatccagatgaccttc
ctgcggctgctgtccaccgaggctaatcagaacctcacctaccactgcaagaacagcgtg
gcctatatggacggggccacggggaacctgaagaaggccgtgctgctccagggctccaac
gacgtggagatcagagctgagggcaacagccgcttcacctacaccgttatggaggacggc
tgcacgaaacataaaggaacgtggggaaagacagtgattgagtacagatcccagaagacc
agccggctgcccatcgtggacatcgctcctgtggatattggaggagcggaccaagagttt
ggtgttgacgtcggcgcagtttgcttcttgtaa
DBGET
integrated database retrieval system
