Oncorhynchus mykiss (rainbow trout): 110493580
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Entry
110493580 CDS
T07259
Name
(RefSeq) ATP-dependent RNA helicase DDX39A
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110493580
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110493580
Spliceosome [BR:
omy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110493580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110493580
NCBI-ProteinID:
XP_021423608
Ensembl:
ENSOMYG00000046318
LinkDB
All DBs
Position
17:complement(27482749..27489409)
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AA seq
427 aa
AA seq
DB search
MAENDVDNELLDYEEDEEPQVAPETTTPAGKKEVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCPHIVVGTPGRILALIR
NKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCV
ALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgacgttgacaacgagctgttggactatgaagaggatgaggagcctcag
gttgccccggagaccaccacacctgcgggcaagaaggaggtaaagggctcttatgtctcc
atccacagctccggtttccgagacttcctgctcaaaccagagctgctccgcgccattgtc
gactgtggctttgaacatccctctgaagtccaacacgagtgcatcccacaggccatcctc
ggcatggacatcctgtgccaggccaagtcgggtatgggcaagacggctgtgtttgtactg
gccaccctgcagcagattgaacctgtggacgggcaggtgtctgtgctggtgatgtgccac
acacgagagctggccttccagatcagcaaagagtatgagcgcttctccaagtacatgccc
accgtcaaggcggccgtgttcttcgggggcctgtccatcaagaaggacgaggacgtgctg
aagaagaactgcccccacatcgtggtgggtacgcccggccgcatcctggccctcatccgc
aacaagaccctgaacctgaagaacgtgaagcactttgtcctggatgagtgtgacaagatg
ctggagcagctggacatgagacgtgatgttcaggacatcttcaggctcacaccccacgag
aagcagtgcatgatgttcagtgccaccttaagcaaagagattcgccctgtctgccgcaag
ttcatgcaggatcccatggaggtgtttgtggacgatgagaccaagctgacgctgcacggt
ctgcagcagtactactgcaagctgaaggatagcgagaagaaccgcaagctcttcgacctg
ctcgatgtgcttgagttcaaccaggtggtgatctttgtgaagtctgtgcagcgctgtgtg
gctctgtctcagctgctggtggagcagaacttccctgcaatcgccatccataggggcatg
gcccaggaggagaggctttcccggtaccagcagttcaaggacttccagaggcggatcctg
gtggccaccaacctgtttggccgagggatggacattgagcgcgtcaacatagtcttcaac
tacgacatgcctgaggactccgacacctacctgcacagagtggcccgtgctggcaggttc
gggacgaaaggtctggccgtgacctttgtgtctgacgagaccgacgccaagaccctgaac
gatgtgcaggaccgctttgaggtcaatgtggcagagctcccagaagagattgacatctcc
acctacattgaacagtccagatga
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