KEGG   Oncorhynchus mykiss (rainbow trout): 110493607
Entry
110493607         CDS       T07259                                 
Name
(RefSeq) collagen alpha-1(IX) chain
  KO
K08131  collagen type IX alpha
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy04510  Focal adhesion
omy04512  ECM-receptor interaction
omy04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:omy00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    110493607
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    110493607
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    110493607
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:omy00535]
    110493607
Proteoglycans [BR:omy00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   110493607
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 110493607
NCBI-ProteinID: XP_021423645
Ensembl: ENSOMYG00000015824
UniProt: A0A8C7VMM6
LinkDB
Position
17:complement(28015815..28029009)
AA seq 687 aa
MARARIYRESLLVILLQIVLICSAQRGPVGPRGPAGPPGIAGVPGVDGIDGDRGDDNFIE
GGPGPDGEDGKPGTPGTAGLPGADGATGPVGDLGPDGPPGPKGEPGEAGEVGEIGEGPDG
TDGAAGAQGLVGELGKVGTPGSQGRKGPVGLPGPAGPRGLPGVYKGEDLCPNACPSGLNG
YSGLPGMKGHKGVKGESGEPGKQGHKGEEGDQAGEGEMGAQGLPGQGGPRGITGIMGLKG
DRGPRGTFGDLGPQGIQGGSGDVGQRGVVGETGPNGGQGARGPQGIRGLPGGKGEPGLAG
PDGREGIPGLPASKGITGKVGSPGDTGLQGLPGLPGAYGPKGQSGEMGNSGDPGSVGLMG
SPGKSGERGEQGEVGPVGARGGPGERGVRGPDGPAGAPGPRGGKGDLGLLGLPGPAGLVG
QNGDRGAVGLTGAQGEQGEAGSEGTAGDRGDFGDEGEPGEKGSTGRPGETGNKGPEGGRG
IPGPEGKPGQPGPRGMQGDRGVPGLPGTQGPAGKKPSDTHITQVCMRVMQEQLAQLAASL
RRPEAGISGLPGPPGPPGPAGPSGENGYPGLDGARGLPGLKGPPGLLGRKGLKGDTGDRG
DRGPTTRGVKGEPGAPGLPGDHGRAAYGTDGRDGERGPRGVPGIPGVPGPPGRPGLNGYC
ESSQCILPMVASPISAKDSGMKGPNEE
NT seq 2064 nt   +upstreamnt  +downstreamnt
atggctcgcgccaggatatatcgggagtcattgctcgtgattttattgcaaatagtcctt
atttgctccgctcagaggggcccggtcggtcccagaggccccgcaggaccccctggtata
gcaggcgtgcctggagtcgacggcattgatggagacagaggggatgataacttcatagaa
ggcggccctggtcctgatggggaagatggcaaaccaggaactcccggaacagccggccta
ccaggggcagacggtgccactggacctgttggggatctcggcccagatgggcctcctgga
ccaaaaggtgaacccggagaggctggggaagtcggggagattggcgagggacctgatggg
actgatggagcagctggtgcacaagggttggtgggcgagcttggcaaagtcggtaccccg
ggatcacagggcaggaaggggccagttgggcttcccggacctgcagggcccaggggtctt
cctggtgtgtataagggggaagacctgtgtcccaatgcctgtccttctggtcttaacgga
tattctggcctcccaggcatgaagggccacaaaggggtaaaaggagagtctggtgagcct
ggaaagcaaggacacaagggagaagaaggagaccaggcaggagagggcgagatgggagct
caagggctaccaggccaaggggggcccaggggaataacaggcataatgggcctcaaaggt
gacaggggaccacgtggaacgtttggagaccttggtccccagggaattcagggtggctca
ggtgacgtgggccaaagaggagtagtgggcgagactggaccaaacggtggtcaaggggcc
cgagggccacaaggaataaggggccttccaggggggaaaggggagcctggtctagctggg
cccgatggacgtgaaggaattcccggattgccagcatctaagggtattactgggaaagtt
ggcagtccaggtgatactgggctccaaggacttcctggtttgccaggcgcttatggtcca
aaagggcaaagtggcgaaatgggtaactctggcgacccaggttctgtaggactaatgggg
tctcctgggaaatcaggggaacgtggcgagcagggagaagtaggacctgtcggagcaaga
ggtggaccaggtgaaagaggagtgcgtggaccagacggacctgcaggggcaccaggaccc
aggggaggtaaaggggatctcgggcttcttggtttgcctggccctgccggcctggttgga
cagaatggagacaggggtgcagtcggtttgaccggtgctcaaggagaacaaggagaagcg
ggttcagagggcacagcgggagacagaggggactttggtgacgaaggggagccaggagag
aaaggatcgacgggcagaccaggagagactggaaacaaagggccggagggcggccggggc
ataccaggcccagagggcaagccgggccaacctggaccacgtggcatgcagggagacaga
ggggtgccaggactgccagggacacaggggccagcggggaaaaaaccaagcgatacacac
atcacacaagtttgcatgagggtaatgcaagagcagctagcccagctagcagccagcctg
aggaggcctgaagcaggcatctctggactgccaggtccccctggcccccctggtcctgca
ggcccctccggagagaacggctacccaggactggacggggccagaggactgccaggtctc
aaaggacctccagggctactgggtcgcaaagggctcaaaggtgacacgggcgacagagga
gacagaggacccacaacaagaggggttaaaggagaacctggagctcccggtctaccaggt
gatcacggtagagccgcctatggcacagacggccgcgacggcgagagagggccacgcggc
gttcccggtattcccggcgttccagggcctcctggtcgtcctggcctcaacggctactgc
gagtcgtcacagtgcatccttcctatggtggcgtcaccgatatcggcaaaagattccggc
atgaaagggccaaatgaggaataa

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