Oncorhynchus mykiss (rainbow trout): 110493607
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Entry
110493607 CDS
T07259
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04510
Focal adhesion
omy04512
ECM-receptor interaction
omy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110493607
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110493607
09142 Cell motility
04820 Cytoskeleton in muscle cells
110493607
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
omy00535
]
110493607
Proteoglycans [BR:
omy00535
]
Extracellular matrix (ECM) proteoglycans
Others
110493607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
110493607
NCBI-ProteinID:
XP_021423645
Ensembl:
ENSOMYG00000015824
UniProt:
A0A8C7VMM6
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Position
17:complement(28015815..28029009)
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AA seq
687 aa
AA seq
DB search
MARARIYRESLLVILLQIVLICSAQRGPVGPRGPAGPPGIAGVPGVDGIDGDRGDDNFIE
GGPGPDGEDGKPGTPGTAGLPGADGATGPVGDLGPDGPPGPKGEPGEAGEVGEIGEGPDG
TDGAAGAQGLVGELGKVGTPGSQGRKGPVGLPGPAGPRGLPGVYKGEDLCPNACPSGLNG
YSGLPGMKGHKGVKGESGEPGKQGHKGEEGDQAGEGEMGAQGLPGQGGPRGITGIMGLKG
DRGPRGTFGDLGPQGIQGGSGDVGQRGVVGETGPNGGQGARGPQGIRGLPGGKGEPGLAG
PDGREGIPGLPASKGITGKVGSPGDTGLQGLPGLPGAYGPKGQSGEMGNSGDPGSVGLMG
SPGKSGERGEQGEVGPVGARGGPGERGVRGPDGPAGAPGPRGGKGDLGLLGLPGPAGLVG
QNGDRGAVGLTGAQGEQGEAGSEGTAGDRGDFGDEGEPGEKGSTGRPGETGNKGPEGGRG
IPGPEGKPGQPGPRGMQGDRGVPGLPGTQGPAGKKPSDTHITQVCMRVMQEQLAQLAASL
RRPEAGISGLPGPPGPPGPAGPSGENGYPGLDGARGLPGLKGPPGLLGRKGLKGDTGDRG
DRGPTTRGVKGEPGAPGLPGDHGRAAYGTDGRDGERGPRGVPGIPGVPGPPGRPGLNGYC
ESSQCILPMVASPISAKDSGMKGPNEE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcgccaggatatatcgggagtcattgctcgtgattttattgcaaatagtcctt
atttgctccgctcagaggggcccggtcggtcccagaggccccgcaggaccccctggtata
gcaggcgtgcctggagtcgacggcattgatggagacagaggggatgataacttcatagaa
ggcggccctggtcctgatggggaagatggcaaaccaggaactcccggaacagccggccta
ccaggggcagacggtgccactggacctgttggggatctcggcccagatgggcctcctgga
ccaaaaggtgaacccggagaggctggggaagtcggggagattggcgagggacctgatggg
actgatggagcagctggtgcacaagggttggtgggcgagcttggcaaagtcggtaccccg
ggatcacagggcaggaaggggccagttgggcttcccggacctgcagggcccaggggtctt
cctggtgtgtataagggggaagacctgtgtcccaatgcctgtccttctggtcttaacgga
tattctggcctcccaggcatgaagggccacaaaggggtaaaaggagagtctggtgagcct
ggaaagcaaggacacaagggagaagaaggagaccaggcaggagagggcgagatgggagct
caagggctaccaggccaaggggggcccaggggaataacaggcataatgggcctcaaaggt
gacaggggaccacgtggaacgtttggagaccttggtccccagggaattcagggtggctca
ggtgacgtgggccaaagaggagtagtgggcgagactggaccaaacggtggtcaaggggcc
cgagggccacaaggaataaggggccttccaggggggaaaggggagcctggtctagctggg
cccgatggacgtgaaggaattcccggattgccagcatctaagggtattactgggaaagtt
ggcagtccaggtgatactgggctccaaggacttcctggtttgccaggcgcttatggtcca
aaagggcaaagtggcgaaatgggtaactctggcgacccaggttctgtaggactaatgggg
tctcctgggaaatcaggggaacgtggcgagcagggagaagtaggacctgtcggagcaaga
ggtggaccaggtgaaagaggagtgcgtggaccagacggacctgcaggggcaccaggaccc
aggggaggtaaaggggatctcgggcttcttggtttgcctggccctgccggcctggttgga
cagaatggagacaggggtgcagtcggtttgaccggtgctcaaggagaacaaggagaagcg
ggttcagagggcacagcgggagacagaggggactttggtgacgaaggggagccaggagag
aaaggatcgacgggcagaccaggagagactggaaacaaagggccggagggcggccggggc
ataccaggcccagagggcaagccgggccaacctggaccacgtggcatgcagggagacaga
ggggtgccaggactgccagggacacaggggccagcggggaaaaaaccaagcgatacacac
atcacacaagtttgcatgagggtaatgcaagagcagctagcccagctagcagccagcctg
aggaggcctgaagcaggcatctctggactgccaggtccccctggcccccctggtcctgca
ggcccctccggagagaacggctacccaggactggacggggccagaggactgccaggtctc
aaaggacctccagggctactgggtcgcaaagggctcaaaggtgacacgggcgacagagga
gacagaggacccacaacaagaggggttaaaggagaacctggagctcccggtctaccaggt
gatcacggtagagccgcctatggcacagacggccgcgacggcgagagagggccacgcggc
gttcccggtattcccggcgttccagggcctcctggtcgtcctggcctcaacggctactgc
gagtcgtcacagtgcatccttcctatggtggcgtcaccgatatcggcaaaagattccggc
atgaaagggccaaatgaggaataa
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