Oncorhynchus mykiss (rainbow trout): 110493678
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Entry
110493678 CDS
T07259
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X2
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110493678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110493678
03009 Ribosome biogenesis [BR:
omy03009
]
110493678
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110493678
Spliceosome [BR:
omy03041
]
Complex A
U1 snRNP components
U1 related factors
110493678
Complex B
110493678
Ribosome biogenesis [BR:
omy03009
]
Eukaryotic type
Pre-60S particles
Helicases
110493678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110493678
NCBI-ProteinID:
XP_021423757
Ensembl:
ENSOMYG00000008949
LinkDB
All DBs
Position
17:complement(30106728..30115371)
Genome browser
AA seq
497 aa
AA seq
DB search
MPGFSDRDRGRDRGYGAAPRFGGGGGGSRGGPPQGKFGNPGERLRKKHWNMDELPKFEKN
FYQEHPDVTRRPPQEVENYLRSKDVTVKGRDCPKPMMKFHEANFPNYVMDVIAKQGWAEP
TPIQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKQY
VQINVGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFTETKRRCDEL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYD
YPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLIAVLREANQAINPKLLQMAEA
RGGNSYGGSWRGGKRWL
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggcagagacagggggtatggagctgcacctcgt
tttggaggcggcggtggtggcagtaggggtggaccccctcaggggaaatttggcaaccca
ggtgaaaggctgcgcaaaaaacactggaacatggatgagctcccaaagttcgagaagaac
ttctaccaggagcatccggatgtgacccgcagaccacctcaagaggtggagaactacctg
cgaagtaaagacgtaacagtgaaaggcagagactgccccaagcccatgatgaagtttcac
gaggccaattttccaaattatgtgatggatgtgattgccaaacaaggatgggctgagcca
actcctatccaggctcagggctggcctctggccctcagtgggaaagacatggtgggcatc
gcccagacaggctccggtaaaacccttgcttatctgctgcctgcaatcgtgcacattcaa
caccagccattcttggagcatggagacggacctatatgtttggtgctggccccgacccgt
gagctggctcagcaggtgcagcaggttgccgctgagtacggcagggcctcccgcctgaag
tcagtctgcgtctatggtggagcccccaaaggaccccagattcgggaccttgagagaggt
gttgagatctgtattgccaccccagggcgtctcatagacttcctggaggctgggaagacc
aaccttcgcaggtgtacttaccttgtgctggacgaggctgaccgtatgctggacatgggc
ttcgagccccaaatccgcaaaattgtggaccaaattcgaccggatcgtcagaccctcatg
tggagtgccacctggcccaaggaggtgcgccagctggctgaggacttcctgaagcagtac
gtccaaatcaacgtgggtgcgctgcagctcagcgctaaccacaacatcctgcagatagtg
gacgtgtgcaacgacggcgagaaggatgacaaactcctccggctgctggaagagatcatg
agcgagaaggagaacaagacaatcatctttaccgagaccaagagacgctgcgacgagctc
accaggaggatgagacgagatggctggccagcaatgggtatccatggagacaagagccag
caggagagggactgggttctcaatgagttcaaatacggcaaggcccccatcctcatcgcc
accgacgtggcctcccgcggtctagatgtggaggatgtgaaatttgtcataaattatgac
tatcctaactcctctgaggactatatccaccgcattggacgcacggcccgcagtcaaaaa
acaggcaccgcctacaccttcttcacccccaacaacatgaaacaggccagtgacctcata
gctgtgctccgcgaagctaaccaggctatcaaccccaagctcctccagatggcagaggcc
agaggaggtaattcctatggcgggtcgtggcggggggggaagaggtggctttag
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