Oncorhynchus mykiss (rainbow trout): 110494086
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Entry
110494086 CDS
T07259
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1 isoform X1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
omy01009
]
110494086
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110494086
Protein phosphatases and associated proteins [BR:
omy01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
110494086
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
110494086
mRNA cycle factors
Stress granule specific factors
110494086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
Staufen_C
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
110494086
NCBI-ProteinID:
XP_036806020
UniProt:
A0A8K9XPP8
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All DBs
Position
17:53670309..53678165
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AA seq
707 aa
AA seq
DB search
MSQFQCPGNLMSSPAASPLQQLSQPQPGYSIPCASGPLPSESASHPLLSSALPSGSATPF
SPTSTVSNMANPKEKTPMCLVNELARFNKIQPEYKLLCEQGPAHSKIFSVRLSLGDQHWE
AEGTSIKKAQHSAAATALAQTTLPKPSMRNNPRNNTVDCMTHTVELNAFCMKLGVKPMYK
PIDPYPGMRPSNFNYNIRAPGPYQRSMQQYYYPFPPVGPVLYHMELNIGGQQFHGKGRTR
QLAKHDAAAKALKTLQKEPILLQQLPETNGEDTENFNKSEISQVFEIALKRNMPVNFEVL
KEAGPPHMKSFMVCVAVGEFCGEGEGKSKKIAKKLAATAVLEELRRLPQLSPSVEKIQPA
RIKKKTKSIIKLQTSPEYGQGMNPISRLAQIQQAKKEKEPEYSMMTERGLPRRREFVMQV
TVCGHCAEGLGPSKKVAKRNAAEKMLELLGFKVPPPQPHKPALKTDEKVLQKKNGDGRKV
TFFEPGSVEESQSLGSKAENYRQPYLSHQQLPAGILPMVAEVAQAIGASPSLGHQNKGYG
PRTNPAKATLTAMIANELLYAGTSLTADTILKSQNSMAHLVPHGPLTRPSEQLSYLANVQ
GLQVDYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALSVLKLLSELDQQQ
HQQQTNDRTGSGPTSGCGKQDMDGCDSLIIKQANSSNLGQQTLDGTV
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagttccagtgtccgggtaaccttatgtcgagccctgctgccagccccttgcag
cagctgtctcagccccagccagggtacagtatcccctgtgcctcgggccccctgccctcc
gagagcgccagtcacccgctcctgagctcagccctgccctcgggctcagccactccattc
agccccacctccacagtatctaacatggcaaaccctaaagagaagacccccatgtgtctg
gtgaatgagttagcccgtttcaataagatccagcctgagtataagctgctctgtgagcaa
ggaccagctcattccaagatcttctcagtgcggttatcactgggggatcagcactgggag
gcagaggggaccagtataaagaaggcccagcactctgcagctgccacagccttggcccag
acaacactgcccaaacctagcatgaggaacaacccccgcaacaacacagtagattgcatg
acacacacggtggagctgaatgccttctgtatgaagctaggggtgaagcctatgtacaag
cccatagacccctaccctgggatgagaccatccaacttcaactacaacatcagggccccg
gggccttaccaacgctccatgcaacagtactactacccgtttcccccggtggggccggtg
ttgtaccacatggagctgaacatcgggggccagcagttccacgggaaggggcgcacgcgg
cagcttgccaaacatgacgccgctgccaaggcactgaagactctacagaaagagcccata
ctgctgcagcagctgcctgagacgaatggagaagacacagagaacttcaataaatcagaa
atcagccaggtgtttgagatcgcactgaagaggaacatgcctgtcaactttgaggttctg
aaggaggcaggcccgcctcacatgaagagcttcatggtgtgtgtggcggtgggcgagttc
tgtggcgagggcgagggcaagagtaagaagatcgctaaaaagctggcagctacagccgtg
ctggaggaactgaggagactgccccagctgtcccccagcgtggagaagattcagccagca
cgcattaagaagaaaaccaagtccattattaagctgcagaccagtccagagtatgggcag
ggcatgaaccccatcagcagactggctcagatccagcaggctaagaaagagaaggagcca
gagtatagcatgatgacggagagggggctgcccagacgcagggagttcgtcatgcaggtg
actgtgtgtggccattgtgcggagggcttaggccccagtaagaaggtagcgaagaggaac
gcagcagagaagatgcttgagcttctaggtttcaaagtgccaccgcctcagccccacaaa
cctgcgctcaaaacggacgaaaaggtcctgcagaagaaaaatggagacgggaggaaagtg
accttcttcgagccgggctctgtagaagagagccagtcgctgggctccaaggcagagaac
taccgccagccctacctcagccaccagcagctcccagcaggcatcctgccaatggtggca
gaggtggcccaggctataggggccagccccagtctggggcaccagaacaagggttacggc
ccccggaccaaccctgccaaggccaccctgacggccatgatcgccaacgagctgctgtac
gctggtacctccctgactgccgataccatcctgaagagtcagaacagtatggctcatcta
gtacctcacggacccctgaccagaccctccgaacagctcagctacctagccaacgtacaa
ggtctacaggtggattacaaagacttccccaaaaacaacaagaatgaatttgtatcgctg
atcaactgctcctcccagccgcctcttatcagccacggcattggcaaggacgtggagtcc
tgtcacgacatggcggccttgagtgtcctgaaattactgtcagagctggaccagcagcag
caccagcagcagaccaatgacaggacagggagcggaccaacctctgggtgtggcaaacag
gacatggacggctgcgactctctcatcatcaaacaggctaactcaagcaacttgggacaa
cagactctggatggcactgtgtag
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