KEGG   Oncorhynchus mykiss (rainbow trout): 110494171
Entry
110494171         CDS       T07259                                 
Name
(RefSeq) E3 ubiquitin-protein ligase NRDP1
  KO
K11981  E3 ubiquitin-protein ligase NRDP1 [EC:2.3.2.27]
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:omy00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    110494171
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:omy04131]
    110494171
   04121 Ubiquitin system [BR:omy04121]
    110494171
   03029 Mitochondrial biogenesis [BR:omy03029]
    110494171
Enzymes [BR:omy01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     110494171
Membrane trafficking [BR:omy04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    110494171
 Autophagy
  Mitophagy
   PINK1-Parkin associated proteins
    110494171
Ubiquitin system [BR:omy04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    110494171
Mitochondrial biogenesis [BR:omy03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Parkin-dependent mechanism factors
    110494171
SSDB
Motif
Pfam: USP8_interact zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-rbx1 zf-RING_6 zf-Nse zf-C3HC4_4 zf-RING_UBOX zf-C3HC4_3 zf-RING_5 U-box zf-ANAPC11 Sina_ZnF zf-RING_10 zf-TRAF LXG Sos7 DUF641 Bacillus_HBL zf-RING_16 zf-TRAF_2 BLOC1_2 SlyX
Other DBs
NCBI-GeneID: 110494171
NCBI-ProteinID: XP_021424658
Ensembl: ENSOMYG00000013704
LinkDB
Position
17:complement(56787282..56817762)
AA seq 318 aa
MGYDVTRFQGEVDEDLLCPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQICPVDRSVV
TLAHLRPVPRIMRNMLSKLQINCDNAGFGCVAVLRLDQLQSHLRDCQHNPKRPVQCEQGC
GLEMPKDEASSHNCIKHLRSVVQQQQGKIADLEKASAEHKHQLAEQKRDIQLLKAYMRAI
RSANPNLQNLEDTIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLIDSGCPP
SIVNDLIENAHERNWPAGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGEDM
ILEPGLVMIFAHGVEEIL
NT seq 957 nt   +upstreamnt  +downstreamnt
atgggctacgacgtcacccggttccagggggaagtggatgaggacctgctgtgccccatc
tgcagtggagtcctagaggagcccgttcaggcccctcactgtgagcacgccttctgcaat
gcctgcatcacccagtggttctcgcagcagcagatatgccccgtggaccgcagcgtggtg
acgctggcccacctgcgccccgtgccccgcatcatgcgcaacatgctctccaagctgcaa
atcaactgcgacaacgccggctttggctgcgttgccgtgctgcgcctggaccagctgcag
tctcacctcagggactgccagcacaaccccaagaggcccgtccagtgcgagcagggctgc
ggtctggagatgcctaaagatgaagcgtctagccataactgcatcaaacacctgcgcagc
gtggtgcagcaacagcagggcaagatcgcagacctggagaaggcctctgctgaacacaag
caccagctagcggagcagaaacgggacatccagttactgaaggcgtacatgagggccatc
cgcagtgccaaccccaacctgcagaacctggaggacaccattgagtacaatgagattctg
gagtgggtgaactccctccagccggctcgcgtcacccgctggggcggcatgatctcaacg
ccagacgctgtcctccaggcggtcatcaaacgctcactcatcgacagcggctgcccgcct
tccatcgtcaacgaccttatcgagaatgcccacgagaggaactggcccgccggcctggcc
acgctggaaacgcggcagatgaaccggcgctactatgagaattacgtggccaagcgtatc
ccggggaaacaggcggtggtggtgatggcctgtgagaaccagcatatgggggaggacatg
atcctggagccaggcctggtcatgatctttgcccatggggtggaggagatactatga

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