Oncorhynchus mykiss (rainbow trout): 110494329
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Entry
110494329 CDS
T07259
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110494329 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110494329 (smarcc2)
03036 Chromosome and associated proteins [BR:
omy03036
]
110494329 (smarcc2)
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110494329 (smarcc2)
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110494329 (smarcc2)
PBAF complex
110494329 (smarcc2)
GBAF(ncBAF) complex
110494329 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
110494329
NCBI-ProteinID:
XP_021424966
Ensembl:
ENSOMYG00000014601
LinkDB
All DBs
Position
17:complement(62971037..62984902)
Genome browser
AA seq
1069 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTRLPMKSFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEAKLLGKLKDIIKRHQGSVTEDKTSSSHVVVP
IPASLEEEEWVRLVMKRDKQVLLHWGYYPDSYDTWISASEVEAAVEEAPSPEKPRKVHAK
WILDLDQFNEWMNEEDYEVGEGGPKRKRISAKTLTDEVTTPGDERRDKKPGSAKKRKRSP
SPSPTPPPQESKKKNTKKGCGPTTPYTKSKRGQREEEPEDLTKDLDEPSPVPAVEEVTLP
KTGTHAHTPNTKKDSESTPVKGGTMTDLDEQEDESMETAGKEEEEGSPSVKGEPVKGSDL
HEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDT
YRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFH
VLADTPSSLVPLQPKASQTPAAQQILSFPDKVKEKQPADLQNFGLRTDMYSKKTGPPKSK
TAASAMRDWTEQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDT
SSSLGPLAYQPVPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALV
EAHVRRVEEAARTSGRQDPLYGLEGSGIAGTSLEEGEKPEESSEESKSDSQSSEEKRETK
ENKEGAMEEGEKQGENGKKEEERGRDGEGEGEQEAEKTDSEMGDGEKDKEGKEGSEESQR
EGESEGERKAKVERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMK
KLEIKLRHFEELETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQQH
SQTGGPHSAPAPTGPPPPPQGPSATQSQPTLSTPAPQPAPSPAPPTTSIPSSAQPAEPQP
PPSGPHTSPPRPPGQPPTAHSSTTPTLHEPSAPLPEDTHHSSAPVPPPQ
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaacgtaaaatatttcgaagcgtctgataca
gtctcgcagttcgacaatgtccgcgtttggttgggcaagaattataaaaagtacatccag
gcggagccccccaccaacaagtctctgtccagcctggtggtccagctgctgcagtttcag
gaggaggtgttcggacgacatgtcagcaacccacctctcaccaggttgccgatgaagagt
ttcctggactttaagtctggtggggctctctgccacattctggctgcagcctacaagttc
aagagcgatcagggctggcgcaggtttgactttcagaatccttctcggatggaccgcaat
gtggagatgttcatgactatcgagaaatctctagtacagaacaactgtctgagtcgacca
gtgatctacctgagctctgacattgaggccaagctactggggaaactgaaggacatcatc
aagaggcaccagggctcagtgactgaagacaagacgtccagctcccatgtggtggttccc
atccctgccagtctggaggaggaggagtgggtgcgtctggtaatgaagagagacaagcag
gtgctgctccactggggatactatcctgacagctatgacacctggatctcagccagtgag
gtggaggctgctgtggaagaagcgcccagcccagagaaacccaggaaggtccatgccaag
tggatcctggaccttgaccagtttaatgagtggatgaatgaggaggactatgaggtgggg
gaggggggccccaagaggaagagaatctcagccaagaccctgacggatgaggtcaccacc
ccaggggacgagcgtcgtgacaagaagcccggcagtgccaagaagaggaagcgctcgccc
tccccctcgcccaccccaccaccccaggagagcaagaagaagaacacaaagaaagggtgt
gggcccaccaccccgtacactaagtctaagcgaggccagagagaggaggagccagaggat
ctgactaaagatctggatgaaccatcacctgtacctgcagtggaggaggtcaccctacct
aagacaggtacacatgctcacacacccaacactaagaaagactctgagtcaacaccagta
aagggaggtaccatgacagacctggatgagcaagaggatgaatccatggaaactgcagga
aaggaggaggaggagggctctccgagtgtgaagggagagccggtgaaaggttcggacctc
catgaggacaacgtgaccgagcagacccaccacatcattatccccagctatgctgcctgg
tttgactacaacagtgtccatgctatcgagcgtagagccctcccagagtttttcaacggc
aagaacaaatccaaaacccctgagatttacctggcctataggaacttcatgatagacact
tacaggctgaacccgcaggagtaccttacctctaccgcctgtcgtaggaacctggccgga
gatgtgtgcgccatcatgagggtgcatgcgttcctggagcagtggggtctgatcaactac
caggtggactcagagagccggcccacccccatgggccccccgcccacctcccacttccac
gtcctggctgacaccccctccagcctggtgcccctgcagcccaaggcctcccagactccg
gcggcccagcagattctgtccttcccagacaaggtgaaggagaagcagccagccgacctg
cagaactttggcctgaggacagacatgtacagcaagaagactgggcctcctaagagtaag
actgctgccagcgccatgcgagactggactgaacaggagacactactgctgctagagggt
ctagagatgtacaaggatgactggaacaaggtgtcggagcacgtgggctcacgtacccag
gacgagtgtatcctacacttcctgcgtctgcccatcgaggacccatacctggaggacacg
tcctcgtccctgggccccctggcctatcagcccgtccccttcagccaggcaggcaacccc
gtcatgagcacagtggccttcctggcctccgtggtggacccccgcgtggcctccgcagcc
gccaaatctgccctggaggagttttcccgtatgaaggaggaggtcccagcagcactggtg
gaggcccatgtgaggagggtggaagaggcggcgcggaccagtggcagacaggaccccctc
tacggcctggaaggcagcggcatcgcaggcaccagcctggaggagggagaaaaacctgaa
gagagcagcgaggagagtaaaagtgacagccaatccagtgaagagaagagggagaccaag
gagaacaaagagggagccatggaagagggggagaagcaaggagaaaacgggaagaaggag
gaggagagaggaagagatggagaaggagagggagagcaagaggctgagaagaccgactcg
gagatgggtgatggagagaaggataaggaagggaaggagggctcggaggagagccagaga
gaaggagagagtgagggagagaggaaggctaaggtggagcgggatgtgggagaggggaac
ctggctaccgcagctgcctctgccctggctgctgctgccgtcaaagccaagcacctggct
gctgtggaggagaggaagatcaagtctctggtggctctgctggtggagactcagatgaag
aagctggagatcaaacttagacactttgaagagctggagaccatcatggaccgagagagg
gaggcgttggagtaccagaggcagcagctactggcagaccgtcagtcgttccacatggag
cagctgaaatatgcagagatgagggcgcgtcagcagcacttccaacagatccagcagcac
agccagactggaggcccacactccgccccggcccccactggccccccacccccaccccag
ggcccctcagccacccagtcccagccaaccctcagtacccctgcaccacagccagctccc
agcccagcaccccctaccacctccatcccttcctctgcccagcctgctgagccccagccg
ccccccagtggtcctcacacctcacctccccgcccgccaggccagccccccacggcccac
tccagcaccaccccaacactccacgagcctagtgcccctctacctgaggatacacaccac
tcctcagccccagttccccctccacagtga
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