Oncorhynchus mykiss (rainbow trout): 110494438
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Entry
110494438 CDS
T07259
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
omy03036
]
110494438
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
110494438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
HDA2-3
ResIII
PHD-1st_NSD
PHDvar_NSD
HTH_CHD1_Hrp3
PHD_2
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
110494438
NCBI-ProteinID:
XP_021425146
Ensembl:
ENSOMYG00000015681
LinkDB
All DBs
Position
17:67038010..67086398
Genome browser
AA seq
2049 aa
AA seq
DB search
MPGSLSNEDEGQDDMDFEDEIPDEDEEGEHNTVPLTSLDSFFSDDDSLKQQKKKKPKKMK
EGKMPKVKKRKKEGGGGGGIGVGGNDPEEQASEREDDHPLQRPEIGSESESSTYAPAPTT
KKKKKKPKEKKEKKPKRKKREEEEEEDDDDDDDDDDDDENNKEPKSSSQLMQEWGLEDVQ
YGFTEEDYTTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGSKWREFSANNPFKGTSAT
AVAAAVAAAVEMVTVASPISVKEVTTLPSSQPGPIRKAKTKDGKGPGVRRKTKTVKEVKK
KSKGKKTKSKKKASSSEEDFGLEESDFDDVSIHSASVRSDTSGNAKKKARKGRKKRKRED
GDGYETDHQDYCEVCQQGGEIILCDTCPKAYHLVCLDPELEKAPEGKWSCPHCEKEGIQW
EAKDDDDDEEEEVAVEEEDDHLEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGE
WLCPRCMCPPLKGKVQRILHWTWGDPPLPTEVLPGPDGEMVDPLVKPPLKGHPERELFVK
WAGLSYWHCSWVSELQLELYHAVMYRNYQRKNDMDEPPPYDYGSGEEELNNEKRKSKDLQ
YAAMEERFYRYGIKPEWMVIHRIINHSYDKDGDVHYMIKWRDLPYDQCTWEVDDFDVPEY
HHSKHSYWDHREQMIGDDQRPLVVRKGKKGKDEEKRREREIPPDAPIIDPTIKFEHQPWY
INATGGTLHPYQLEGLNWLRFSWAQSTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPY
LVSAPLSTIINWEREFEMWAPDFYVVTYTGDKDSRAVIRENEFTFEDSTVKTGRKVFRMK
KDSAIKFHVLLTSYELITIDQTILGSINWACLVVDEAHRLKNNQSKFFRILNGYKIYYKL
LLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRL
KADVFKNMPSKTELIVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKC
CNHPYLFPVAAMEAPVLPNGSYDGNQLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKM
LDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATA
DTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLV
VRPGLGSKTGSMSKQELDDILKFGTEELFKDEMEAAARAMGSHQKLWDIKDGDEGSVIHY
DDNAISKLLDRSQNATEDTEIQNMNEYLSSFKVAQYVVKDEDAEEEPQREIIKQEENVDP
DYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDTSQEDQEWQDDLSDNHSEYSVGSE
DEDEDFEERPEGGRRHSRRQLKSDRDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAIMRW
GMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQH
VLTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPLGLELKKLTESLSSDPNTPVPASPAATP
QPPGTPVPPEKMDSTSGPTEDKETTELEYKKLPELEVEKTDKAADRDETVKCSTEDKPVS
SEESSERTGTPSTLPEPFTNPKEPPSKQTELSSNQSSPKAEPCRETEKSLDKGDSDNAPA
KPEEKELKPVFSDEPKSEDMPVPEGRLNGEKEAQEETEDIRREVEKNGFKMRFMFNIADG
GFTELHTLWQNEERAAVSSGKMYDIWHRRHDYWLLAGIVTHGYARWQDIQNDPRYAILNE
PFKTEMHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHPAMALNTRFA
EVECLAESHQHLSKESLAGNKPANAVLHKGLSSPSVYTAAGLKHCLQTQDLVLNQLEELL
SDMKADVTRLPNMLSRIPPVSARLQMSERSILSRLTSRGNEPPPQQPFGQSSFACSQMYS
TGFGGSFRGPAGGAMVNYSQMPLGPYVSVSNGPPPPSSHLDKKSCDPLRDVNTPDLKSGK
PSDVICIED
NT seq
6150 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggtcgttaagcaatgaagacgagggacaagacgacatggattttgaagacgag
ataccagatgaggatgaggagggtgaacacaacactgtcccgctcacatctctggacagc
ttcttctctgacgacgactccctcaaacaacagaagaagaagaaacctaaaaagatgaag
gagggcaagatgcccaaagtcaagaagaggaaaaaggagggaggaggaggtggcggaata
ggagttggtggcaatgacccagaggagcaggcctcagagcgggaggatgaccatccactg
caacgtccagagattggctcagagagcgagagcagcacctacgcccccgcccccaccaca
aagaagaagaagaagaaaccaaaggagaagaaagagaagaaacccaaacggaagaagaga
gaagaggaggaggaggaggatgacgatgatgatgacgacgatgatgatgatgatgaaaat
aataaggagcccaagtcatccagccagctgatgcaggagtggggtctggaagatgtgcag
tatggcttcacagaggaggactatacaaccctcaccaactacaaggctttcagccagttc
ctcaggccacttattgccaagaagaaccctaagatccccatgtcaaagatgatgacagtg
ttagggtccaagtggcgtgagttcagcgccaacaaccccttcaaaggcacctccgcaact
gctgtggctgccgcggtggctgctgctgtggaaatggtcactgtggcctcgcccatctct
gtcaaagaggtgactaccctaccaagctctcagcctgggccaatcagaaaagccaaaacc
aaagatggaaaggggcctggggtaagacggaagacaaagactgtaaaggaggtgaagaag
aaaagtaaagggaagaagaccaaatcaaagaagaaagcatcctcgagtgaagaggacttt
gggctggaggagtcggactttgatgatgtcagcatccacagtgcctcagtgcgctctgat
acctcggggaatgccaagaagaaagcccggaagggtcggaaaaaaaggaaaagagaggat
ggggacggctatgagacagaccaccaggactactgtgaggtgtgccagcagggaggggag
atcatcctgtgtgacacctgtcccaaagcttaccacctggtgtgtctggaccccgagctg
gagaaggcccccgagggcaagtggagctgcccccactgtgagaaggagggcatccagtgg
gaggccaaagatgatgatgatgatgaggaggaggaggttgcggttgaggaagaggatgac
cacctggagttctgcagagtgtgtaaagatggaggggagttgctgtgctgtgacacctgc
ccctcctcctatcatatccactgcctcaaccctcccctgcctgagatacccaatggggag
tggctgtgcccaaggtgcatgtgcccacctctgaaggggaaggtacagaggattctccac
tggacttggggggatccccctttacccactgaggtgctccctggccctgatggagagatg
gtggacccgctggtcaagccccccctgaagggccatccggagagggaactgtttgtcaag
tgggctggtctctcctactggcactgctcctgggtcagcgaactacagttagagctgtac
catgcggtgatgtaccgtaactaccagcggaagaacgacatggacgagccccctccgtac
gactacggctctggggaggaggagctgaacaacgagaagaggaagagtaaagacctgcag
tatgctgccatggaggagagattctaccgctacggcatcaagccagagtggatggtcatc
cacaggatcatcaaccacagttatgataaggatggagatgtgcactacatgatcaagtgg
agagacctgccctatgaccagtgcacctgggaggtggatgactttgacgtccctgagtat
caccacagcaaacactcctactgggaccacagggagcagatgattggtgatgaccagcgc
cccttagtggtgagaaagggaaagaagggtaaagatgaggagaagaggagggagagagaa
atcccccctgatgccccaattatagatcctaccatcaagtttgaacatcaaccctggtac
atcaatgccactgggggcaccctgcatccgtaccagctggagggtctgaactggttacgg
ttctcctgggcacagagcacagacactatcctggcagacgagatgggcctgggcaagact
gtccagaccatcgtcttcctctactcactctacaaggagggtcactccaaagggccatac
ctggtcagtgcccccctgtccaccatcatcaactgggagagggagtttgagatgtgggcc
ccagacttctacgtggtcacttacactggggacaaagatagccgagcggtcatcagggag
aacgagttcacttttgaggacagtacagtcaagacaggccgcaaggtcttccgtatgaag
aaagatagtgccatcaagttccatgtgttgttgacatcatatgagctgattaccattgat
cagaccattctgggctccattaactgggcctgtctggtggtggacgaggcccacagactg
aagaacaaccagtcaaagtttttcagaatcctcaacggttataagatctactataagctg
ctactgactggcactcctctgcagaacaacctggaggagctgtttcacctgctcaacttc
ctcaccccagagagatttaataacctggagggctttctggaagagtttgcagacatctcc
aaggaggaccagatcaagaagctgcatgacctgctgggcccacacatgctcaggagactg
aaggctgatgtcttcaagaacatgccttccaagacagagctcattgtacgagtggagctc
agccccatgcagaagaagtactacaagttcatcctgacgcggaactttgaggcgctcaac
tccaagggcgggggcaaccaggtgtcccttctcaacatcatgatggacctgaagaagtgt
tgcaaccacccctacctgttcccagtggcagccatggaggcgccagtgttacccaatggc
tcttatgatgggaatcagctggtcaagtcctcaggcaaactcaccctgctccagaagatg
ctgaagaaactcaaagatgaaggacacagagttctcatcttctcgcagatgactaagatg
ctggatctgcttgaggactttctggaatacgagggctacaaatatgaacgcatcgatgga
ggcatcacaggggggctacgacaggaggctatcgaccgcttcaatgcaccgggcgcacag
cagttctgcttcctgctctccacccgagctggaggcctgggcatcaacctagccacggca
gacaccgtcatcatctacgactcagattggaaccctcacaacgatatccaggcattcagc
agggcccaccgtataggtcagaacaagaaggtgatgatctatcgcttcgtgacaagggcc
agcgtggaggagcgtatcacccaggtggccaagaggaagatgatgttgacccaccttgtg
gtgaggcccggcctgggctccaaaaccggctccatgtccaaacaggagctggacgacatc
ctcaagtttggcactgaggagctcttcaaggatgagatggaggcggccgctcgggccatg
ggttcccaccagaaactgtgggacataaaggatggagatgagggcagtgtcattcactat
gatgacaatgccatctccaagctgctggaccgtagccagaatgccacggaggacactgag
atccagaacatgaacgaatacctcagctccttcaaggtggcccagtatgtggtcaaagac
gaggacgcggaggaggagccccagcgggagatcattaagcaggaggagaatgtggatcca
gactactgggagaagctgctgaggcaccactatgagcagcagcaggaggacctggcccgt
aacctgggcaaaggcaaacgcatccgcaagcaggtcaactacaacgacacgtctcaggag
gaccaagagtggcaggatgatctttcagacaatcattccgagtactccgtggggtccgag
gacgaggacgaagatttcgaggagaggccggaaggtgggcgcaggcactctcgcagacag
ctgaagagtgacagggacaaacctctgccacccctgctggcacgcgtagggggcaacatc
gaggtgctggggttcaacacccgtcagcggaaggccttcctcaatgctatcatgcgctgg
ggcatgcctcctcaggacgccttcaactctcactggctggtcagagacctgagagggaag
agtgagaaagagttcagggcctatgtgtccctgttcatgagacatctttgtgagccgggg
gcagatggagcggagacctttgcagacggtgtcccacgagagggcctgtcccgccaacat
gtcctcaccaggatcggagttatgtctctggtcaggaaaaaggtccaggagtttgagcat
gtcaatggaaagtacagcactccagacctgatcccacttggactagagttgaagaaactg
actgagagtctgtcctctgaccccaacacccctgtccctgccagccctgcagccacaccc
cagcctcctggcactcctgtcccaccagagaagatggactcaacctcagggcctactgaa
gacaaggagaccacagaattagagtacaagaagctaccagaactggaggtagagaagacg
gacaaggctgctgacagggatgagacagtgaagtgcagcacagaggacaaaccagtctcc
tcagaggagagtagtgaaaggacaggcacaccctccacacttccagagccattcaccaat
cctaaagagcctccatccaaacagacagagctgtcctccaatcaaagctcaccaaaagcg
gagccttgtagagagacagagaagtctttagataaaggagacagtgataatgccccagcc
aaacctgaggaaaaggaactgaagccagttttttcagacgagcccaagagcgaggacatg
ccagtgcccgagggcaggcttaatggtgagaaagaagcacaggaggagacggaggacatc
aggagggaggtggagaagaacggcttcaaaatgaggttcatgttcaacatcgccgacgga
ggcttcacagagctacacaccctgtggcagaacgaggagcgggccgctgtgtcatctggg
aagatgtatgacatctggcaccgtcgccacgactactggttgctggctggcatcgtaaca
catggctatgcccgctggcaggacattcagaacgacccacgttatgccatcctcaatgag
cccttcaagactgagatgcacaaggggaactacctggagatgaagaacaagttcctggct
cgtcgctttaagctgttggagcaggctctggtgatagaggagcagttaagaagggcagcg
tacctgaatatgacccaggaccccaaccacccggctatggccctgaatacccgctttgct
gaggtggagtgtctggctgagtcccaccagcacctgtccaaggagtctctggctggaaac
aagccagccaacgctgtgctgcacaaaggtctgtcatctcccagtgtgtacacagcagca
ggactaaaacactgtctacaaactcaagatctggtactgaaccagctggaggagctgctg
agtgatatgaaggcagacgtgacgcggcttcccaacatgttgtcccggatccccccggtg
tctgcccgtctgcagatgtctgagaggagcatcctcagccgcctcaccagccgcggcaac
gaacctccgccccaacagccgttcggccagagctcatttgcctgttcccagatgtacagc
actggttttgggggcagcttccgggggcctgcgggaggagccatggtcaactacagccag
atgcccctgggaccctacgtcagtgtgtccaacggccccccacccccgtccagccacctg
gacaagaagtcctgcgacccgctgagggacgtcaacacccctgacctcaagtcaggcaag
cccagtgatgtcatctgtattgaagattag
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integrated database retrieval system
