Oncorhynchus mykiss (rainbow trout): 110494539
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Entry
110494539 CDS
T07259
Symbol
taf4a
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110494539 (taf4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110494539 (taf4a)
03036 Chromosome and associated proteins [BR:
omy03036
]
110494539 (taf4a)
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110494539 (taf4a)
Coactivators
SAGA/TFTC/STAGA complex
110494539 (taf4a)
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
110494539 (taf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
110494539
NCBI-ProteinID:
XP_021425350
Ensembl:
ENSOMYG00000044533
LinkDB
All DBs
Position
17:73444750..73457632
Genome browser
AA seq
929 aa
AA seq
DB search
MLMSSRTNGDLLKRLQKQGLECKRGVIISNTWSQGSAMDASSSESDSSARHGQGKTVAVS
ASIITPLPNHGGKVASSATQTLNGGSLMNCHNSGSAVSLTGAPLSSSCTSSGNASVAVTV
VNNGPGLSKGHASAVMPPSLNTTITQTSFVNSQNVVTSSHAASLGTGPAISHIVRPSMQT
AGSGTANGPNVGLPFDCLNNGQSPTSVAVSAGSHMIMAEAPKTSIQTASCAVTNPSFQSA
PRASTPVTVAASPGGSRSIAQQVLAPRHPQTSPNQPNVQNIQLPPGMVLVRSESGQLLMI
HQQTLAQMQSQSQSQGVMAPRPATPTSTPPFQITSVQAPGTPILTRQVTPTTIIKQGSPV
PTSAPVTTTLQRPPVLQSPMIVVGAAASTSMGTALPGATQKTVTASPGTTVTLATETMEN
VKKCKNFLSTLIKLASSGKQSSETAANVKDLVKDLLEGKIEVEDFTNRLYRELNSSPQPY
LVPFLKRSLPALRQLTPDSAAFIQHSGLQQQASATTPTTVVLDSPALRPAAPTIRPHLQP
VISKQGLTTPMVLQPRQQGAMVRPLQMTPMVTLRGPPPHSHIMLGQPQVQLKQLQTVPVV
NPGVLTGSKSSPVAASLATVVQKNKLKEAGGTFRSAMDDDDINDVASMAGVNLSEESARI
LATNSELVGAVTRSCKDEAFLHTATLTSRILEIGKKFGVSDLGPEVVNYVSHASQTRLQN
LLEKVSEVAQQRNINFKEDSRYEQTSDMRAQIKFFEQLDQMEKQRKEEQEREILMKAAKS
RSRQEDPEQLRLKQKAKEVRGMDRIWHNKICVTEVSIVGVCLCRPISWICVCLQMQQQEL
FQLRQKEANLTALAAIGPRKKRKMEAAAAAAGAEGSGSSPAASGSGSSGASRQFIRQRIT
RVNLRDLLFCLENERDTSHSHLLYKGFLK
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgctaatgtccagcagaacaaacggggacttgctcaagaggttgcaaaagcaggggctg
gagtgcaaaaggggtgtcattattagtaatacgtggtcccagggttcagctatggatgcc
tcatcgagtgagtcggactcatcggcacgacacggccaaggaaagactgttgctgtcagt
gccagtataataactcctctcccaaaccacggggggaaagtagcctcttccgcaactcaa
actttgaatggaggcagtttaatgaactgtcacaattcaggaagcgctgtctctctcact
ggggcaccgctgtcaagtagttgcacgagtagcggcaatgcctcggtagctgtcacagtt
gtcaacaacgggccggggttgtcaaaaggacatgcgagcgcagtaatgccaccttcattg
aacaccactatcacccagacatcattcgtgaactctcagaatgttgtcacctcgtctcac
gctgcgagtctgggcactggacctgccatatcacatattgtgaggccatctatgcaaact
gcgggatcgggtacagcgaatggtcctaatgtgggattgcctttcgattgcctgaacaat
ggtcagtcgcccacgtctgtggctgtcagtgcggggtcgcacatgatcatggcagaggcg
cccaaaacaagcatacagactgcttcatgtgctgtaacgaacccgtcgttccagagcgca
ccgagggcttccactccggtgacagtggctgcaagcccgggagggagccgttctatcgcg
caacaggtgttggcgcctcggcacccccagacatccccgaaccagcccaacgttcagaac
atccagcttcccccaggtatggtcctggtgcgcagtgagagtgggcagctgttgatgatc
caccagcagaccctggctcagatgcagtcccagtcccaatcccagggagtcatggccccc
cgcccagccacccccaccagcactcctcctttccagatcacctcagtccaggctcctgga
acgcccatcctcactaggcaggtgactcccaccactatcatcaagcagggctcacctgtg
ccaacctctgctcctgtcaccaccacactccagaggcctcctgtcctacagagtcccatg
atcgtggtaggggctgctgcaagcacttctatggggacagcgctaccaggggccacccag
aagaccgtcaccgcatcacccgggaccactgtcaccttggcaacggagacgatggagaat
gtgaagaaatgcaagaacttcctgtctacattaatcaagctggcgtccagcgggaagcag
tcctcagagactgccgccaacgttaaagacctggtcaaagatctcctggaagggaagatt
gaagtcgaggacttcactaacaggttatacagagagctcaactcctcacctcagccttac
ctcgtgcctttcctcaagaggagccttcctgctctgcggcagctcaccccagactcagca
gccttcatccagcacagtgggctccagcagcaggcctctgccaccacccctaccactgtg
gtactggacagcccagccctgcgccctgcagccccaaccatcagaccacacctccagcct
gtcatcagcaaacaggggctgactaccccaatggtgctccagcctcggcagcagggggca
atggtaaggcctcttcagatgacccccatggtgaccctcagaggtccgcccccccacagt
cacatcatgctgggacagccacaggtgcagctcaaacagctacagacagtccctgtagtg
aatcctggagtgttgactggatctaagtcgtctcctgttgctgcctctctggccactgta
gttcagaagaacaagctgaaagaagctgggggcacgttcaggtcagctatggatgacgat
gacatcaatgatgtggcatctatggctggggttaacctgtctgaggagagtgcccgtatc
ctggcaaccaactccgagctggtgggagcggtgacacggtcctgtaaggacgaggccttc
ctccataccgccacactgaccagtagaatactggaaataggtaagaagtttggtgtgagt
gatctggggccggaggtagtgaactacgtgtcccacgcctcccagaccaggctgcagaac
ctgttggagaaagtctctgaggtggcccagcagaggaacatcaacttcaaggaggacagt
cggtacgagcagacgagcgacatgcgagcccagatcaagttctttgagcagctggatcag
atggagaaacagaggaaagaggagcaggagagagagattctgatgaaggcagcaaagtct
cgttctcgtcaagaagaccctgagcagctgcggttgaaacagaaggccaaagaggtaaga
gggatggatagaatttggcataataaaatatgtgtcaccgaagtgtccatagtaggggtg
tgtttgtgtaggcctatctcgtggatatgtgtttgtctccagatgcagcagcaggagctg
tttcagttgagacagaaggaagctaacctgacggcgctggcagccatcggccccaggaag
aagaggaaaatggaggctgcagccgctgcagctggagctgagggctcagggtccagtccc
gctgcgtctggtagtggtagttcaggagcatccagacagtttatccgccagcgcatcact
cgtgtcaacctcagggacctgctcttctgtttggagaatgagagagacaccagtcattcc
catctcctctacaaaggcttcctcaaatag
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