Oncorhynchus mykiss (rainbow trout): 110494857
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Entry
110494857 CDS
T07259
Symbol
zgc:172302
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy02010
ABC transporters
omy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
110494857 (zgc:172302)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110494857 (zgc:172302)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
omy02000
]
110494857 (zgc:172302)
Transporters [BR:
omy02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
110494857 (zgc:172302)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
110494857
NCBI-ProteinID:
XP_021425896
Ensembl:
ENSOMYG00000005489
UniProt:
A0A8C7VB27
LinkDB
All DBs
Position
1:17467658..17516649
Genome browser
AA seq
2346 aa
AA seq
DB search
MGIGTQLLLLLWKNITYRRRNKVQLIIELVWPLFLFLILISVRHSHPPYKQSQCHFPNKA
LPSAGTLPWVQGIICNINNPCFHNPTQGETPGRVGNFDNSILSRLLVDSQTILSYSGNQT
AFSGFQDLLDTIRRLGERPGAWPNLPVGEYLRANQTFSNFLLTNGSLSPSALDQLFRARL
NFQVVSLAGTGVMLKDIVCNATVLSQFLTVDQEDSMAELQSQLCAIPADTLQQAEQLFLS
QLDFSKFFTRDRLRANAGDLRVISQAVISVSKELAVLMDDLSSLASFRELNSELRLLSPE
NRSTLPQESFRAFSRIMCGHPEVGGERIPSLNWYEDNDIKSFLGKNGTEDNDMDKDNVTT
PYCKSLIQSLESNPLSRIVWRGIKPLFIGKLLYTPDTPAVRNVMKEVNKTFQDLQVLEEL
NGAWMEVAPGIKTYMESSVEIQLLQDLLRRPEVAVLVNLQLENTSWTAKRIARFLSTPNE
PRKEGAPLTWLDVYSDLNNTITTLAQVTQCFSLNKLEGAATEGQMIDRALELLEEREFWA
GIVFLLPNTSLPGLPPHVTYKIRMDIDDVARTNKIKDRFWDPGPAADPFSDMRYIWGGFV
YVQDLVERAVARVLSGVEQSTGLYIQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVAM
IIKGVVYEKEARLKETMRIMGLGTGQLWVSWFISSLVPFLVSAGLLIALLKWGDILPYSN
PAVVFFFLTAFATATIMQCFLISTFFSRANLAAACGGLIYFALYLPYVLCVAWRDHLTTT
HRVLASLFSPVAFGFGCEYFSQYEEQGVGIQWFNLHSSPMEGDTYNFTTSIIMLHIDACI
YALATWYIEAVFPGEYGVPRPWNFVFSLNYWGGIPLEAGMPIPPAPRGQGGDRIEADPSH
LILGVAIRNLVKIYKQGAKLAVNHLNLKFYEGQITSFLGHNGAGKTTTMSILTGLFPPTA
GTVYIKGMDIRTDMDIIRKTLGVCPQHNVLFDILTVEEHVWFYGRLKGLLGDEVRKELDT
LLEDVGLLHKRHEQTRNLSGGMQRKLSVAIAFVGGSKVVVLDEPTAGVDPYSRRGIWDLL
LKYRKDRTIILSTHYMDEADLLGDRIAIISQGKLCCCGSPLFLKAKLGTGYYLTVVKKEG
LDTRTPSSASATKLPPATKDSDSSMSDDTGLGSDVSGSDLAALLTLAQRHIPGARLVEDV
GREAVINLPQKSAEDSSLAIFLTELDRRQADLGITSYGLSDTTLEEIFLRVAEETGVDVD
PEDSPGQADTPHGQGQGQGLSGEPSEDPGRKRLRKQEPQETDLLSGDGHGGVPLTGWGLT
WQQLRALFIKRWLYALRSRRGFFAQIVLPAVFVLIALLFSLIVPPFGKYPSLQLQPWMYG
EQYTFFSNDAPGDPAIQNLLDALLDRPGFGTKCMENSTDPQCLQEEEGMFMRPQILYSTW
QLFNRGNWTADKPSPDCECSSEEVRRMLPDCPEGAGGIPPPQVQRLTGDILQNMTGRNIS
DYLVKTYPQIMKKSLTSATKKWINEFRYGGFSLGGRGTQAVPQAYQIEDSVMSIRSRYKV
AQNSSLDQLLGRLPEFLGGLNSQNNVKVWYNNKGWHAMASFVNVMNNGLLRASLPPGSER
MKYGITAYNHPLNLTKEQLTEIAMMTTSVDVLVSICVIFSMSFVPASFVLFLIEERVSKA
KHLQFVSGVRPILYWLANFTWDMLNYTVPATMVVLIFICFQQQSYVSETNLPALVLLLLL
YGWSITPLMYPASFLFSVPSTAYVVLTSINLFIGINGSIATFVLELFVDQHLNDINKILK
KVFLIFPHFCLGRGLIDMAKNQAMLDAFQRLGAKQTLDPLEWDFVGKNLFAMAVEGVVFF
LFTILLQYKFFVNCRPCSEPELPPLGPEDEDIARERERVKSGKAQADILTMLDLSKVYKA
GKKPAVDRLCLGIPRGECFGLLGVNGAGKTSTFRMLTGDTAITYGEAFLSHHSVLTEMER
VHQLMGYCPQFDAICDLLTGREHLEFYARLRGVPEESVAKVAQWGVKKLGLTQYAEREAG
GYSGGNKRKLSTAISLIGAPPVIFLDEPTTGMDPKAKRFLWNCILSVIKEGRAVVLTSHS
MEECEALCTRMAIMVNGRFQCLGSVQHLKNRFGDGYTIVLRLSGTKPPEDPCTVDTYIKG
SFPGIELKERHQNVLQYQLPSHSCSLARVFDVLSNNHEELGIADYSVSQTTLDQVFVNFA
KEQSDDDLLREVTINGGTPAPQPRRAAQPTQPGQTAKPAQTTKPPQSVKSSDGRPRETKP
NGVPDSGMAMTSRPQEKPQSSRRELSSRRSSKESSANGSKGTRETSGSKDPTSLFLVGSS
TQDSSV
NT seq
7041 nt
NT seq
+upstream
nt +downstream
nt
atggggatcgggactcagctcttgctcctgctctggaagaacatcacttaccgcaggagg
aacaaggtccagttgattatcgagctggtctggcctctgttcctcttcctcatcctcatc
tcagtgcgtcactctcatcctccctacaaacagagccaatgtcatttccccaacaaggca
cttccctcagcaggcactctgccatgggttcaggggatcatctgcaacatcaacaacccc
tgtttccacaaccccactcagggcgagaccccaggacgggtgggcaactttgacaactcc
atactctctcgactcttagtggactcccagacaatcctgtcctacagtggcaaccagaca
gccttctctggctttcaggaccttctagatactatacggagacttggagagaggccaggc
gcctggccaaatcttcctgtgggagaatacctgcgagccaatcagaccttctccaacttt
ctcctgaccaatggcagcctgtctccctctgccctagaccagctgttcagggctcgcctg
aactttcaggtggtgtctctggcaggcactggggtgatgctgaaggacattgtgtgcaat
gccactgtgctgagccagttcctcactgtagatcaagaggattctatggcagaactgcag
agccagctctgtgccatcccagccgacaccctgcagcaagcagagcagctcttcctctcc
cagttggacttcagcaagttcttcacgagagacagactgagggccaacgctggtgacctc
cgggtcatcagtcaagcggtcatctccgtgtccaaggagttggcagtactcatggatgac
ctgtcctctcttgctagctttagggagttgaactcggagctgcgtctgctctcgccagag
aaccgttcgaccctgccgcaggagagcttcagggccttctccaggattatgtgtggccac
cctgaggtgggcggcgagaggatcccttcactcaactggtacgaggacaatgacatcaag
tcattcctgggcaagaacggcaccgaggacaacgacatggacaaggacaacgtcaccacc
ccgtactgtaaaagcttgatccagagcctggagtccaacccactgtctcgcatcgtgtgg
agaggtatcaagcctctgttcattggcaaactgctgtacacaccggacacccctgccgta
cgcaacgtcatgaaagaggtgaacaagaccttccaggacctgcaggtcctagaggagctg
aatggtgcctggatggaggtggcacctggtatcaagacctacatggagagtagtgtggag
atacagctgctgcaggatctgctgaggcgaccggaggtggccgtgttggttaatctgcag
ctggagaacacttcctggacagccaagcgcattgcccgcttcctgtccacgcccaatgaa
cccaggaaagaaggagctccccttacctggctggacgtgtactccgacctgaacaacacc
atcaccactctggctcaagttacccagtgtttctccctgaacaagctggagggtgctgcc
acagagggacagatgattgacagggccttggagctgctggaggagagagagttctgggct
gggatagtgttcctccttcccaacacgtctttacccggtcttccccctcatgtcacctac
aagatccgcatggacatcgacgatgttgctcgcaccaacaagatcaaggacaggttctgg
gacccgggcccagcagcggaccccttcagtgacatgcgctacatctgggggggctttgtg
tacgtacaggacctggtggagagagctgtggcccgtgtgctgagtggtgtggagcagtcc
actggcctctacatccagcagatgccctacccctgctacgtggatgacgttttcctacgc
gtgctgaaccgctcgctgcccctgttcatgacgctggcgtggatctactcggtggccatg
atcatcaagggcgtggtgtatgaaaaggaggcgcggctcaaggagaccatgaggatcatg
gggcttggtacaggccagctgtgggtcagctggttcatcagcagcctggtgcccttcctg
gtcagcgccggcctcctcattgctctgctcaagtggggggacatcctgccctacagcaac
ccggctgtggtgttcttcttcctgacggccttcgctacggccaccatcatgcagtgtttc
ctcatcagcaccttcttctcccgggccaacctggcagccgcctgcggaggcctcatctac
ttcgccctctacctgccctatgtgctgtgtgtggcctggagagaccacctcaccaccaca
caccgtgtcctagcaagcctgttttctcctgtggcctttggctttggctgtgagtatttc
tcccagtacgaggaacaaggagtgggcatccagtggttcaacctgcactccagccccatg
gagggagacacctacaatttcaccacttccataatcatgttgcatatcgatgcatgtatc
tacgctctggccacctggtacattgaagctgttttcccaggtgaatatggggtccccagg
ccatggaacttcgtgttcagtttgaactattggggaggaattcctctagaggccggcatg
cccatccctccggctcccagaggacagggaggagatcgcatcgaagccgacccctctcac
ctcatactcggtgtggccatccgcaacctggtcaaaatctacaaacaaggtgccaagctg
gcggtcaaccacctcaatctcaagttctatgaagggcagatcacctctttccttgggcac
aacggtgctggcaaaacaaccacaatgtctatcctgacgggtctgtttccccccacggct
gggactgtgtacattaagggcatggacatccgaactgacatggacatcatcaggaagacc
ttgggagtgtgtcctcagcacaatgtcctttttgacattctgaccgtagaggagcatgtg
tggttctatggtcgtctgaagggcctattaggcgatgaggtgaggaaggagttggacact
ctcctggaggatgtgggcctgctgcacaaacgccacgaacagaccaggaacctgtctggt
ggtatgcagaggaagctgtcggtggccatagcatttgtggggggttcgaaggttgtggtc
ctggatgagcccacagctggggtggacccctactcccgtcgaggcatttgggacctgctg
ctcaagtaccgcaaagatcgcaccatcatcctctccacccactacatggatgaggctgac
cttctcggagaccgcatagccatcatctcccaagggaagctgtgctgctgcggctccccc
ctcttcctcaaggccaagctggggacgggctactacctcaccgtcgtcaagaaggaggga
ctggatactcgaacccccagtagtgccagcgctaccaaactgccccctgccacaaaggac
agtgactcctccatgagtgacgacacaggtctgggcagtgatgttagtggctcagacctg
gctgccctgttgaccctggcgcagcgtcacatccccggggcgcggctggtggaggacgtg
ggccgtgaggcggtcatcaacctgccccagaagtcggcagaggacagcagtctggccatc
ttcctcacagagcttgacaggaggcaggctgatctgggcatcaccagctacggcctgtct
gacaccaccctggaggagatctttctgagagtggctgaggagacaggggtggacgtggac
ccagaagacagcccaggacaagctgacacaccccatgggcagggtcaaggacagggcttg
tctggagagccatctgaggatccaggaagaaaacggcttcgcaagcaagagccccaggag
acagacctgctgagtggggatggccatggcggtgtccctctgactggttggggtttgacg
tggcagcagctccgtgctctcttcatcaagaggtggctgtatgccctccgcagtcgcagg
ggcttcttcgctcagatcgtgctgcctgctgtgtttgtgttgatcgctctccttttcagc
ctcatcgtccctccgtttggaaagtacccctcgctccagctacagccctggatgtacggg
gaacagtacaccttcttcagcaacgatgcccctggggatcctgccattcagaatctgctg
gatgcccttctggaccggcctggatttggaaccaagtgcatggaaaacagcacggatcct
cagtgtttgcaggaggaggaaggcatgttcatgaggccccagattctctactccacctgg
cagctcttcaacaggggcaactggactgcagacaagccatctcctgactgtgagtgcagc
tctgaggaggtccgcaggatgctaccagactgccctgaaggagccggaggcatcccccct
ccacaggtccagagattgacaggggatatcctgcagaatatgaccggccgcaatatctcg
gactacctggtcaagacttaccctcagataatgaagaaaagcctaacttcagccactaag
aagtggatcaacgaattcagatatgggggcttctctctggggggcagaggtactcaggct
gtcccacaggcctaccaaatagaggactcagtcatgtctatacggtcacgttacaaagtg
gcacagaatagctcattggatcagctcctgggtcgcctaccagagtttctgggtggactg
aatagtcagaacaatgttaaggtgtggtataacaacaagggttggcacgccatggcatcg
tttgtcaatgtcatgaacaatggcctgctccgtgccagcctgcccccagggtcagagcga
atgaagtatggcataaccgcctacaaccaccctctcaacctcaccaaggaacagctcact
gaaattgccatgatgacgacctcagtagatgttctggtgtccatctgtgtgatcttctcc
atgtcctttgtgccggccagctttgtgctgtttctcatcgaggagagggtcagcaaagcc
aagcaccttcagtttgtcagcggagtccggcccattctctactggctggctaacttcacc
tgggacatgctgaactatacagtcccggccactatggtggtcctcatcttcatttgcttc
cagcaacagtcctatgtgtctgaaaccaacctccctgctctggtcctgttgctcttgctt
tatggctggtctatcacacctctcatgtatccagcctccttcctgttcagtgtccccagc
actgcttatgttgtcctcacctcaatcaacctcttcatcggcatcaacggcagcatagcc
acctttgtcttggagctgttcgtagatcagcacttgaacgatatcaacaagatcctaaag
aaagtcttcctgatcttcccccacttctgtctgggtcgaggcctcatcgacatggctaag
aaccaggctatgttggacgctttccagagactgggcgcaaagcagaccctggaccccctg
gaatgggactttgtggggaagaacttgtttgccatggctgtggagggtgtcgtgttcttt
ctcttcacaatactgctacagtacaagttctttgtcaactgcaggccctgctctgagcct
gagttgcctcctcttggcccggaggatgaggacatcgccagggagagagagagagtgaag
agtgggaaagctcaagcggatatactcaccatgttggacctgagtaaggtgtacaaagct
ggcaagaagccagcagtagatcgtctgtgtctgggtattcctcgtggtgagtgctttggc
ctgctgggggtaaatggggctgggaagacctccacgtttcgcatgctgactggagacact
gcgatcacctatggagaagcatttctcagtcatcacagtgtgctgacggagatggagcgg
gtccaccagctgatgggctactgcccccagtttgatgccatctgcgacctgctgactggc
agggagcacctggagttctacgctaggctccgaggggtgccagaggagtctgtggctaag
gtggctcaatggggagtgaagaagctggggctgacccagtatgcagagcgagaggccgga
ggctacagtggaggcaacaaacgcaaactctccactgctatctccctgatcggagctccc
cctgttatattcctggatgagcccaccactggcatggaccccaaggccaagagattcctg
tggaactgcatcctgagcgtcatcaaggagggaagggccgttgttctcacctcccacagt
atggaggaatgtgaagctctctgcacacgaatggccatcatggtgaacggaaggttccag
tgtctgggctccgttcaacatcttaagaacaggttcggggacggctacacgatcgtcctg
cgcctgtcagggaccaagcctcccgaggatccgtgcacagtggacacttacatcaagggc
tccttcccgggcattgagctaaaggagaggcaccagaatgtgctgcagtaccagctgccc
tcccactcctgctccttggcgcgggtcttcgatgtgctttccaacaaccacgaggagctg
ggcatcgccgactactcagtgtcacagaccaccctggaccaggtgtttgtcaactttgcc
aaagagcagagcgatgacgacctgctgagggaagtgacaatcaacggagggacaccagca
cctcaacccagaagagcggcccagcccacccaaccagggcagacagccaaaccagctcaa
acaaccaagcctccccagtctgtcaagtcctcagacggcagacccagagagaccaagcca
aatggggtcccagacagtggcatggcgatgaccagcaggccacaggagaagccccagtcg
agcaggagagagttgagtagtcggaggtcaagcaaggaatcgtctgccaacggatccaag
ggcacaagggagacttcaggcagtaaggatccgaccagtctgttcctagtgggtagcagc
acacaagacagcagtgtgtaa
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integrated database retrieval system
