Oncorhynchus mykiss (rainbow trout): 110495684
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Entry
110495684 CDS
T07259
Name
(RefSeq) transcription factor Sox-1a-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110495684
Transcription factors [BR:
omy03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
110495684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
110495684
NCBI-ProteinID:
XP_021426737
Ensembl:
ENSOMYG00000021249
UniProt:
A0A8C7R3C5
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All DBs
Position
18:complement(16732325..16735884)
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AA seq
338 aa
AA seq
DB search
MYSMMMETDLHSPVPQTNTNSGHTGGSSNGNKVNQDRVKRPMNAFMVWSRGQRRKMAQEN
PKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKD
KYSLAGGLLTGTGGGGVGLGMSPGVGQRLDSPGGHVGASAASYAHMNGWANGAYSGQVAA
AAAAAAMMQEAQLAYSQHPGSGHHHHSHHHHPHNPQPMHRYDMSALQYSPISNSQSYMNA
SPSGYGGITYTQHQSSGVASSGSMGTLGSLVKSEPSVSPPVSTHSRAPCPGDLRDMISMY
LPTGEAAGDPSVQSRLHALPQHYQSSTTGYLKKRTTLW
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgtatagtatgatgatggagactgacctacactccccagtgccccaaacgaacacgaat
tcggggcacacgggaggatcaagcaatgggaacaaagtcaaccaagaccgcgtaaagaga
ccgatgaatgccttcatggtttggtcccggggccagcggcggaagatggctcaggagaac
cccaaaatgcacaactccgagatcagcaagcggctcggcgccgagtggaaggtgatgtcc
gaggcggagaagagacccttcatcgacgaggcgaagcggctacgagctatgcacatgaag
gagcatccggattataaatacagaccgagacggaagaccaagacactgttaaaaaaggac
aaatactctttggccggtgggctgcttaccgggacagggggtgggggtgtcggtctaggg
atgagccctggggtcggacagaggttagacagtcccgggggtcacgttggtgcgtctgct
gccagctacgcgcacatgaatggctgggcgaacggtgcgtactcggggcaggtggctgca
gctgcggcggccgcggccatgatgcaggaggctcagctcgcctacagccagcacccgggc
agcgggcaccaccaccactcacaccaccaccacccgcacaacccccagcccatgcaccgc
tacgacatgtcggccctccagtacagccccatctcgaactctcaaagctacatgaacgcc
tctccatccggctacggcgggatcacctacacgcagcaccagagctctggtgtcgcctcg
tccgggtcgatgggcacactgggctctctggtgaaatcggaaccgagtgtgagccctccc
gtctctactcactcgcgcgccccgtgtcccggggacttgagggacatgataagcatgtat
ttaccgacgggggaagctgcaggtgacccgtccgttcaaagtagacttcacgcgctgccg
cagcactaccagagctccacgacagggtacctaaagaaaaggacgacgttgtggtag
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