Oncorhynchus mykiss (rainbow trout): 110496103 Help Entry 110496103         CDS       T07259                                  Name (RefSeq) helicase SKI2W isoform X1   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism omy  Oncorhynchus mykiss (rainbow trout) Pathway omy03018   RNA degradation Brite KEGG Orthology (KO) [BR:omy00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     110496103  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:omy03019]     110496103 Enzymes [BR:omy01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      110496103 Messenger RNA biogenesis [BR:omy03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      110496103   mRNA degradation factors    3'-5' decay     Ski complex      110496103 SSDB OrthologParalogGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel Helicase_C DEXQc_Suv3 ResIII MTR4-like_stalk HTH_23 DUF3516 Motif Other DBs NCBI-GeneID:  110496103 NCBI-ProteinID:  XP_036808524 Ensembl:  ENSOMYG00000042947 UniProt:  A0A8C7UID5 LinkDB All DBs Position 18:complement(35918293..35971717) Genome browser AA seq 1255 aa AA seqDB search MHGLHLTTLNLPPVGPTDLPLSLLEMGCSGRFELITHPQPNDQPLYPQSTLPHGLPPTSV GLEAEVEKRFLRDPAWLPIHDTDAAFHRFLKLAERDVRVDSLLHCSSSPLHSGISVVRDP TTGMLLDFTEVLLGDTGISAKNSMSLQRPPNPNPSESLRGSNTNYPFLPGGMDELTLEQI KTKSELEEDIDFENGLLTVPPGLKVGMDFSDKDAKTTKGEINLLSLLSTFDDIVDSQPEA EEKEKGLGSGDAPKLPRTNSLEDLGIKDSPSIPGTTSTEKKDGGTTKPGEGHEERKRWAI PVDITSPCDDFYKRIPNPAFKYPFELDTFQKQAVLRLEAHESVFVAAHTSAGKTVVAEYA IALSQKHMTRTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPEASCLIMTTEILRS MLYNGSEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSE WIGRIKKKHIYVISTAKRPVPLEHYLYTGNSTKTQKEMFLLLDPTGNFQTKGYYSAIDAK KERTSKHAQSFGTKNASQKTTPNQDRAVWLSLLHFLSQRQQTPVVAFTFSRTRCDDNARS LASMDLTSSGEKSDIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGIAVHHSGILPILKE VIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAG RRGLDATGTVIILCKSGVHDMGELHVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDM MRRSFSESHRDTQAHEQQIGQLKQTLSSLPPLDTEGQLSDLLPYYYTVTELRITAEALQC AVLGSVNGLKALSVGRVVVVNNKQHFNALGVLLQVSSDSVNRTFTALVICEKGNEEGGGD SRNSSAFPHLYNTALFLPEGPCSHTVQKLKLQDVSAITVKTLKVIPDRIIDNYNKRQQAR FRLDPPGQAISTATQELLRLAEANPGGVVTLDAVNDLQLKSVDVVEGTMRLRMLQDSLKD FNCIHSPTFSEQFLRVQERMSVQEELDKLLFLISDQSLSLLPEYHQRIKVLQSLQYVDNS GAVQLKGRVACQISSHELLLTELLFENALSPLAPEESAALLSCLVFQQKTQVEPHITNTL QEGIERVLAVAQRIGELQRDCGITQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDV QEGTVVRCIQRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH NT seq 3768 nt NT seq  +upstreamnt  +downstreamnt atgcatggcctacacttgacaacattaaatcttccccctgtgggccccacagatctcccg ctatccctgctggagatgggttgctctggcaggtttgagctcatcacacatccacagccc aatgaccagcccctgtatccacaaagcacgctcccccatggactccctcccaccagtgtg ggcctggaggcagaggtagagaagcgcttcctacgcgaccctgcctggcttcccatacac gataccgacgctgccttccacagatttctgaagctggctgagcgagatgttcgtgtggac tctcttcttcattgctcttcatctcctctccactctggcatctcagtagtcagagatcca acgacaggaatgcttttggacttcactgaggtgttactgggggacacaggcatctctgct aagaattcaatgtccctgcagcgtccaccaaaccctaatccctctgagagtctccgagga agcaacaccaactacccctttctgcccggtggtatggacgagctgacactggagcaaatc aagacgaaatccgagctggaggaagacatagactttgagaacgggttactcacagtgccc cctggacttaaagttgggatggacttcagtgacaaagatgccaaaaccacaaagggagaa atcaatctcctgtccctcctatccacctttgacgacatcgtagactcccagcctgaggca gaggagaaagagaaaggacttggaagcggagatgctccaaaactacccagaaccaacagc ctggaagacctggggatcaaggactctccctctatacctgggaccacctcgacagagaag aaagatggaggaacgaccaaaccaggagagggccacgaggagaggaaaagatgggcaatc ccagtagacatcacctccccttgcgatgacttctacaaacgcatccccaaccctgccttc aagtatccctttgagttggacacgttccagaaacaggcagtgttgaggctggaggcccat gagtctgtgtttgtggcagctcacacatcagcaggcaaaaccgtggtggcagaatacgcc atagctctctcacaaaaacacatgaccaggaccatctacacctcccccatcaaggcgctg tccaatcagaagttccgggacttcaagaccacctttggggatgtggggctgctgactggg gatgtccagctgagtcctgaagcctcctgtctcatcatgaccactgagatattgaggtcc atgctctataacggttcagaggtcatcagagatttagagtgggtgatctttgacgaagtt cactacatcaatgatgctgagagaggagtggtgtgggaggaggttctgatcatgttacct gaccacgtcagcattattctgctgagtgccactgtccccaacgctgtggagttcagtgag tggatcgggcgcattaagaagaagcacatctatgtgatcagcacagcgaagagacctgtg cctctggagcactacctgtacacaggcaacagtaccaagacccagaaagagatgttccta ctgctggaccctacaggcaacttccaaaccaaagggtactattctgcaatagatgccaaa aaggaacgcaccagtaaacacgcccagtcctttgggacgaaaaatgcatctcagaagact acacccaaccaggaccgggcggtgtggctttccctcctccacttcctgtcccagcgccag cagacccccgtcgtggcgttcaccttctccaggacgcgctgcgacgacaacgcccgctct ctagcctccatggacctcaccagctcgggggagaagagcgacatccactccttcttccag aagagcctgagccgcctcaggggaggggaccgccagctgccccagatcctgttgatgagg gacctgctgaagagggggatcgccgtgcatcacagcggcatcctgccaatcctaaaggag gtcattgagatgctgttctcacgggggctagtaaaggttctgtttgccactgagacgttt gctatgggagtgaatatgcccgcgaggacagttgtgtttgacagcatacggaaacacgat ggtaccggcttccgaaaccttctgcctggcgagtatatccaaatggctggtagagctggt aggagaggtctggatgccacaggcactgtcatcatcctctgcaagtcaggggtacatgat atgggagaactacatgtaatgatgctggggaagcccacagtgctgcagtcccagttcagg ctgacctacaccatgattctcaacctgctgcgtgtggaggccctccgagttaccgacatg atgaggaggagcttctctgagagccacagagacacacaggcccatgagcagcagatcggt cagctgaaacagactctgtcctctcttcctcctctggacacggagggtcagctgtctgac ctactgccgtactactacactgtcactgagctacgcatcaccgctgaggcgctgcagtgt gcagttctggggtccgtgaatgggttgaaggctctctccgtgggacgagtggtagtggtc aacaacaaacagcacttcaacgcccttggagtcctcctacaggtgtccagcgactcagtg aatcgtacatttaccgctctcgtcatctgtgagaaaggcaacgaggagggaggaggggac agccgcaactccagtgccttcccccacctctacaacactgccctctttctacctgagggt ccctgcagtcacacggtccagaagctgaagctacaggacgtgtcagccatcacggtcaag accctgaaggtgatccctgaccgaatcattgacaactataacaagaggcagcaggcacgc ttcaggcttgatcctccgggccaagccatctccacggcaacccaggagctcctgcgattg gcggaggccaacccaggcggggtggtgacccttgacgcggtgaatgacctccagctgaag agtgtggatgtggtggagggcaccatgaggctgcgcatgctgcaggacagcctcaaagac ttcaactgcatccactcacccaccttctcagaacagtttctgcgggtgcaggagaggatg agtgttcaggaggagctggacaaactgctcttcctcatctcagatcagtccctgtctcta ctgccagagtaccaccagagaatcaaggtgctccagtccctgcagtacgtggacaatagt ggtgctgtgcagctgaagggcagggtggcctgccagatcagtagccatgagctgctcctc acagagctactgtttgagaacgccctgagtcccctggcccctgaggagagcgccgccctg ctgtcctgtctggtctttcaacagaagacccaggtggagccccacatcaccaacacactg caggagggtattgagagagtgctggcagtggcccagcgtattggggaactgcagagggac tgtgggataacccagacagctgaagaatttgtgggccaattcaagtttggcctgaccgaa gtggtatactgctgggccagaggcatgccatttgcagagattgcacagttaacagacgtc caggagggcacggtggtgcgctgcatccagagactagacgaggtgctgaaggaggtgcgc caggcagcccgcatcgtgggagactcggtcctgggcagcaagatggagaaggcctccctg gccattcgcagagacatcgtgttcactgcttcgctctacacacactga

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