Oncorhynchus mykiss (rainbow trout): 110496231
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Entry
110496231 CDS
T07259
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
110496231
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
omy00536
]
110496231
Glycosaminoglycan binding proteins [BR:
omy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110496231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
DUF2345
Motif
Other DBs
NCBI-GeneID:
110496231
NCBI-ProteinID:
XP_036808684
LinkDB
All DBs
Position
18:complement(40319045..40369178)
Genome browser
AA seq
2169 aa
AA seq
DB search
MDIRDCPFRKKRRPWSVDLSSFALVTLVLALCQLPVARADPVDVLRMLQLPSLPEGVRKV
PGFCTSRRAGTADHAYRISKKAQISAPTNQLFSGRFPENFSIMALVKAHAGLQAFLLSIY
SEQGVQQLGVELGRSPVFLYEDQTGKPAPEDYPLFSGVNLADGKWHRIAISVSKKNVTLL
LDCKKRMTRALPRSKSPVVDTKGITVFGARLLDEEVFQGDIQQLLIASNPQAAYDFCEHY
SPDCDSPLPKTQSQDPNTYKDANGNADKRKPVVVKADKPIVVKAAKPVVVKAAKPVVVKA
AKPVEVKAAKPVVVKAAKPVEVKAAKPVVVKAAKPVVVKAAKPVVVKAAKPVVVKAAKPV
VVKAAKPVVVKAAKPVVVKAAKPVVVKAAKPAPSKPAKAEIAKLEAKVATPATAKLAKTE
PAAAKPTKAKPSPAKQAKAKPTAIEVLLAKIKPTAVTPVVKPTPATKNGSGKKVHGKPVV
EKKLNGNSKVSGNAKPVVEKKVKGEAKVNGNGKTAEDKKVNGDRKSGSYRKANGNGVGAA
KPGTTKAPTERKVTKVQIEKTVVSKVKPGKPETEVKVKVVKTEITKAKPTESVIIKVPPF
TKPAPKKELPEKTKVALDVNNIKSMTQKMPPFGKTALSGTVVPVPEKPKKKPGNGYQQDV
ETANSEAGHTPTESDYYYEEAVLQPESEVIGQEATTGQVEGTLVAEEVELAKAGGEVEAF
TEEEYVTGDLGMKEYDYSYKDYNEPLPEGETGGNMGPALSAVTDEGGASVSAVKGEKGEP
AVLEPGMLIEGPPGPEGQAGLPGPNGPSGPPGSVGDPGERGLPGKAGIAGADGVPGPPGT
SVMLPFRFGSSGGDKGPMVSAQEAQAQAILSQARLALKGPPGPMGYTGRTGPLGTPGSAG
LKGEGGDPGPQGPRGPQGLSGPPGKSGRRGRAGADGARGMPGEGGPKGDRGFDGLPGLPG
DKGHRGDTGGLGPQGGPGEDGERGDDGDIGPRGLPGEPGPRGLLGPKGPNGISGPPGVRG
NDGPHGPKGNLGPQGEPGPPGQQGTSGTQGMPGPQGAHGPPGEKGPTGKPGLPGMSGADG
PPGHPGKEGPVGTKGNQGPNGPQGTIGYPGPRGIKGTQGIRGLKGHKGEKGEDGFPGIKG
DFGVKGERGEGGVPGPRGEDGPEGPKGRVGPPGELGPIGLVGEKGKLGVPGLPGYPGRLG
PKGSLGFPGFPGTNGEKGTRGLIGKLGPRGQRGPTGPRGQRGPRGSTGKPGAKGTSGSDG
PSGPPGERGLPGPQGANGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVG
PQGPSGETGPLGERGHPGPPGPPGEQGLSGPSGKEGTKGDPGPQGGPGKDGPPGLRGFPG
ERGMPGTPGGGGLKGSEGPAGPPGTAGSPGERGQGGSGGPIGPPGRPGPQGPPGPSGEKG
VPGEKGPIGPAGRDGVQGPVGLPGAAGSIGVPGEDGDKGEVGEHGQKGAKGGKGEHGPPG
PPGPMGPLGQPGAAGADGELGARGQQGPFGAKGDEGSRGFPGAPGPIGLQGLPGPSGEKG
ETGDVGPMGPPGPPGPRGPAGSSGADGPQGPPGGVGNPGNLGDKGEPGEAGPPGIGGEPG
KKGPRGEHGDKGEAGQPGTSGPAGGRGGPGDDGPKGNPGPVGFPGDPGPPGELGPRGQDG
AKGERGEDGEQGQAGSPGPTGENGPPGGPGKRGLAGTRGPEGRQGEKGTKGDPGANGPPG
KTGPVGPQGQPGKPGTEGLRGLPGSVGEQGSPGLSGQKGPPGPLGPPGLPGLRGEGGDKG
EKGHSGLIGLIGPTGEQGEKGDRGLPGPQGTHGSKGETGVSGGTGPIGPGGPAGMPGPEG
VKGAKGATGGAGPKGEKGVSGPPGPPGPPGEVIQPMPIQISKKSKRSIDASRMLSETDAE
SAAADATGTEFLTGSEGMEEIFGSLNSLRQEIETMRFPLGTKDSPARTCQDLKLSQPELK
DGEYWIDPNQGCSRDSLKVFCNFTAGGETCLYPSKSVDTVKLNSWTTEKPGSWYSEFATG
SKLSYVDSNGEPIGVVQLGFLRLLSVQARQNFTYHCHRSVAWADRTANNGHKRALHFQGA
NDEDLSYETSPYIKALVDGCSYRKGFDRTVVEVNTPQVEQLPLRDLKITDFGESNQKFGF
EVGPVCFMG
NT seq
6510 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgagattgcccttttcggaagaagcggagaccatggagcgtggacctttcc
tcttttgccttggtaactctggtgctcgcgctgtgccaactacccgtggctcgagcagat
ccagtggatgtgttgcggatgctgcagctgccctctctccccgagggggtgcggaaggtt
ccaggcttctgcacctcccggcgcgccggtaccgctgaccacgcctaccgcatctccaag
aaggcccagatctctgcccctaccaatcagctcttctcaggtcgtttcccggagaacttc
tccatcatggctctggtcaaggcccatgcgggcctccaggccttcctgctgtccatctac
agtgagcagggtgtccagcagctgggggtggagctgggacgctcccctgtcttcctgtac
gaggaccagaccggcaagcccgcgcccgaggactaccccctcttcagcggcgtcaacctg
gccgacggcaagtggcaccgcatcgctatctccgtgtcgaagaagaacgtcactctgctc
ctggactgtaagaagcgcatgaccagggccctgccccgcagcaaaagccccgtggtggac
accaagggcatcaccgtgttcggagcacgcctgctggatgaggaggtcttccagggtgat
atccaacagctgctgatcgcatccaaccctcaggctgcttatgacttctgtgaacactac
agccccgactgtgactcccctctacccaaaacccagtcccaggaccccaacacatacaag
gatgccaatggcaatgctgacaaacgcaaacctgtagtagttaaggcagataaacctata
gtagttaaggctgcaaaacctgtagtagttaaggcggcaaagcctgtagtagttaaggcg
gcaaaacctgtagaagttaaggctgcaaaacctgtagtagttaaggcggcaaaacctgta
gaagttaaggctgcaaaacctgtagtagttaaggctgcaaaacctgtagtagttaaggct
gcaaaacctgtagtagttaaggcggcaaaacctgtagtagttaaggctgcaaaacctgta
gtagttaaggctgcaaaacctgtagtagttaaggctgcaaaacctgtagtagttaaggct
gcaaaacctgtagtagttaaggcggcaaaacctgccccatccaaacctgcgaaagcagag
attgccaagcttgaggccaaagttgccacacctgccacagccaaactagctaaaaccgaa
cctgctgccgccaagcccacgaaagccaagccttccccggccaaacaagccaaagccaaa
ccaactgcaattgaagtcctcctggccaagatcaaacccactgcagtcacaccagtggtc
aagcctacacctgccaccaaaaatggcagtggaaaaaaagtccatggcaagcctgtagta
gagaagaaactaaatggtaattccaaggtcagtggcaatgccaaacctgtagttgagaag
aaagtaaaaggtgaggccaaagttaatggcaacggtaaaactgctgaggataagaaagtt
aatggtgataggaaaagcggcagttacagaaaagctaatggcaacggtgtaggagcagcc
aaacctggaaccactaaagccccgacagaaagaaaagtcaccaaagttcaaatagaaaaa
actgtggtcagcaaagtgaaaccaggaaaaccagaaaccgaagtcaaagttaaagtagta
aaaaccgagatcactaaagccaaaccaacagagtcggtcatcatcaaagttcctcccttc
accaaacctgcaccaaagaaagagctgccagagaaaaccaaggtggcgcttgatgtaaat
aacatcaaatcgatgacccaaaaaatgcctccctttggcaagactgcactcagtggcacc
gttgtccctgtgccggaaaaaccaaagaagaaaccgggcaacggttatcaacaggatgta
gaaacggcaaattctgaggctggccacacccctacagagtcggattattattatgaggag
gcggtcctacagccagagagtgaggtgattggacaagaagcgaccactggccaggtggag
ggaacgttggtggcagaggaggtagagttggccaaggcagggggtgaggtcgaggccttt
actgaggaggagtatgtgaccggagacctgggcatgaaggaatatgattattcctacaag
gactacaacgagcccctgcctgagggagagaccgggggcaacatgggccccgctctgtcc
gctgtgacagacgagggaggcgcctcagtgagcgccgtaaaaggcgagaagggagagcct
gctgtccttgagcctggtatgttgattgagggacctccgggaccagagggacaggcaggt
ctcccgggacctaatggcccatctggccctcctggctctgtcggtgatcctggcgagagg
ggcctccctggaaaggctggtatcgctggtgccgatggggtgccaggccctcctggaacg
tccgtcatgctgcccttccgtttcggaagcagtggaggtgacaagggtcctatggtctca
gcgcaggaagcccaggctcaggccattctgtctcaggccaggctggctctgaagggacca
cccggaccaatgggctacactggacgcacaggacccctgggtacccctggaagtgctggg
ctgaagggtgaaggtggggatcctggacctcagggccccagaggaccacagggtttgagc
ggacctcccggcaaatcaggaagaaggggtcgtgctggagctgatggagccaggggcatg
ccaggagagggtgggcctaagggtgaccgcggtttcgatggcctgcctggattgcctggg
gacaaaggacaccggggtgataccggaggattgggaccccaaggaggtcctggagaggac
ggagagaggggagacgacggagacatcggacccagaggacttccaggtgaaccaggacct
cgtggtttgctcggtcctaaaggtccgaacggaatctccggacctcctggtgtgcgtgga
aacgacgggccccacggtcctaaaggaaacctgggtccccaaggagagccaggcccccca
gggcagcagggtacctcaggaacacagggaatgccaggaccacagggagcccatgggccc
ccaggagaaaagggccccacagggaaacccggtctgccaggcatgtccggagccgacggc
ccccctggtcacccaggaaaggagggacctgttggcaccaaaggaaaccagggccccaac
ggtcctcagggaactattggctatcctggccctcgtggcattaagggaactcaaggtatc
cgtggactgaagggtcacaaaggagagaagggagaagatggcttccctggaatcaaagga
gactttggtgtcaagggggagagaggagagggtggagtgcccggccccaggggagaggac
ggtcccgaggggccaaagggccgcgttggcccccctggcgagcttggacccatcggcctg
gtcggagagaagggtaaacttggtgtccctggacttcctggctatcctggaagacttgga
cctaagggctccctcggtttcccaggattccctgggaccaacggcgagaaaggaacaagg
ggtctgattggaaagctgggacccagaggacaaagaggaccaacgggccccagaggtcag
agaggaccgagaggatctactggcaaaccaggcgccaaaggtacatcaggaagtgacggc
ccatctggtccaccaggagagaggggactgcccggacctcaaggagcaaacggtttcccg
gggccaaagggacctcccggaccaccagggaaggatggactgcccggacaccctggacag
agaggagaagttggattccaagggaagactgggccacccggacctccaggtgttgttgga
cctcaaggtccctcaggagagactggacccctgggcgagcgcggtcaccccgggcctcca
ggaccaccaggcgagcaaggactctccggaccctctggcaaggagggaactaagggagac
cctggtccccaaggcggccccggcaaagatggacccccaggactgagaggcttccccgga
gagagaggaatgcctggaaccccgggaggcggcggactgaaaggaagcgaaggcccagca
ggacctcccggaacagctggatccccaggcgagagagggcagggaggcagtggaggcccc
atcggacccccaggaagacctggcccccaggggcctccaggaccatcaggagagaagggc
gtgcccggggagaaaggtccgatcggcccggctggtcgtgacggtgtccagggcccagtg
ggtctgccaggtgctgccggatccatcggagttccaggagaggacggagacaagggtgag
gttggagagcacggccagaagggagcgaagggcggcaaaggagagcatggtcctcccggt
ccaccagggccaatgggtccactcggtcaacccggtgctgctggagctgatggagaacta
ggagccagaggtcagcaggggccatttggagccaagggagatgaaggatcaagaggattc
ccaggggccccaggtcccattggactgcagggattgccaggcccatcaggagagaaggga
gagacgggagatgtcggaccaatgggtccacctggccccccaggaccccgtggccctgct
ggttcaagcggcgctgacggtcctcaaggtcctcctggtggtgtgggtaaccctggaaac
ctgggagataagggagagcctggcgaagccggaccacctggaatcggaggagagccagga
aagaaaggcccacgtggagaacacggagacaagggagaggcgggacaacctggtacctct
ggccctgctggtggaagaggaggccctggagacgacggacccaagggaaaccctggccct
gttggtttcccaggcgaccccgggccccctggtgaactcggccccagaggtcaggacgga
gcaaagggagagagaggagaggacggtgaacaaggacaagctggatctcctggacccact
ggtgagaacgggcctcctggaggaccaggaaagaggggtcttgctggaacgagaggacca
gagggacgacagggagagaagggaactaagggagatccaggtgccaacggacctccagga
aagacaggccccgtcggacctcagggtcaaccaggaaaaccaggaactgagggtctgaga
ggactccctggatcagtgggcgagcagggttctccgggcctttccggccagaagggacct
cccggaccgctgggaccgccaggtttgccaggactgcgcggcgagggcggtgacaaggga
gagaagggccactcgggtctgattggtctgattgggcccaccggagagcagggagagaag
ggagacaggggactgccagggccacaggggacacacggatccaagggagagactggtgtt
tctggaggcactgggcccatcggtcctggtggccctgctggtatgcccggtcccgaaggt
gtgaagggagctaagggtgctacaggaggagctggtcccaagggagagaagggtgtctca
ggaccccccggacctccaggtcctccaggcgaagtcatccagccaatgcccatccaaatc
tccaagaagtccaagcgctccatcgacgccagccggatgctgtctgagacagacgcagag
tcggctgcagccgacgccaccggcacagagttcctgacaggcagtgagggcatggaggag
atcttcggctcactgaactcgctgagacaggagattgagaccatgcgcttccctctgggc
accaaggacagccccgcacgcacctgccaggacctcaaactcagccagccagagctcaag
gacggagagtactggatcgaccccaaccagggttgctctcgcgactctctcaaggtgttc
tgcaacttcaccgctggtggggagacgtgtctgtaccccagcaagagcgtggacacggtt
aagctcaactcttggaccacggagaaaccgggctcctggtacagtgagtttgcaactggc
agcaagctttcgtacgtggactctaatggcgagccgatcggcgtggtccagttgggcttc
ctgcggttgctgagtgtccaggcccgccagaatttcacctatcactgccaccgctctgtg
gcctgggccgaccgcactgccaataacggccacaagagggcactgcacttccagggcgcc
aacgatgaggacctcagctacgagaccagcccatacatcaaggccctggtcgacggctgc
tcttatcgtaagggcttcgacaggacagtggtggaggtgaacacgccccaggtggagcag
cttcctctgcgggacctcaagatcacagactttggggagagcaaccagaaatttggcttt
gaagtgggacctgtctgtttcatgggctaa
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