Oncorhynchus mykiss (rainbow trout): 110496254
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Entry
110496254 CDS
T07259
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
omy00535
]
110496254
Proteoglycans [BR:
omy00535
]
Extracellular matrix (ECM) proteoglycans
Others
110496254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
Fn3_nematode
DUF4959
VWA_3
DUF4992
Motif
Other DBs
NCBI-GeneID:
110496254
NCBI-ProteinID:
XP_021427714
Ensembl:
ENSOMYG00000016450
LinkDB
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Position
18:complement(40814827..40901992)
Genome browser
AA seq
1910 aa
AA seq
DB search
MPATGLKTWVWNPLLCLALISLSPAPAPAQGQVATPRRLRFKVLSATQLHVSWKEPKGDF
ESYRFIYSTLSDAEVTELEVTKKEAKVIIDFDARQLYTVKVTAVKGAQESKPLLGTFEAQ
LSEPDVKNVQPQNVRPKNQKDTSVTEENNEISEEQFMCKTPAIADIVILVDGSWSIGRIN
FRLVRMFLENLVSAFHVEFDKTRIGLAQYSGDPRIEWHLNTFTTKEAVIDAVKNLPYKGG
NTLTGLALTYILENSYKPESGSRAGVPKIGILITDGKSQDDVQPPARSLREAGIELFAIG
VKNADEKELKAIGSPPEETHVYNVADFSVMSSIVEGLTRTVCDRVEQLDKAIKGDTGPEV
TMAAPRDLVTSEVTARSFRVSWTHAPGTVEKYRVVFYPASGGQPEEKVVQGTVDTVVLNY
LLSLTEYQVAVFAIYASSASEALRGSTTTLALPMVNNLELFDITHNSMRARWRVAEGASG
YMILYAPLTEGDAADEKEVKVAETVNEVELENLTPDTEYTVTVYAMYGEEASDPMTSQET
TLPLTPARNLRFSDVDHSSARLTWEATSKKANGYRIMYVKTNGVQTNEMDVGRITTLLLR
NLTSLTEYTVAIFAIYDEGQAEPLTDSFTTNTVPEPLNLKTSEVSTESFRVSWEHSAQDV
VLYRLTWTPTRGGDTKEMLVNGNRNSHLLTGLRPITEYEVSLIAVFRNEEESDAVTLTES
TVARTTTTTKATTTTTTTRATTTAVVHLGARNLLLSDHTTYSMEVSWELQDRNVRQYRVA
YVTARGDRAEETKMVPGGQNSLLLQPLLSDTEYKVTVTPVYTDGDGPGVSRMGRTLPLSA
PRNLRVSEEWYNRFRITWDTPPSPTMGYRVVYKPISAPGPALETFVGEDVNTMLILNLMS
GTEYGVRVIASYTTGSSEALTGKARTLYLGVTNLNTYQVRMNSMCAQWSSHRHATLYRVV
IESLLNGHKQEARLGGGATRHCFNDLMANTQYKISVYAQLQDTEGPAVTTTERTFPVPTP
APTRPPTTTPPPTIPSTKEVCKAAKADLAFLVDGSWSIGDESFLKIIRFLYSTTGALDTI
GPDGTQVAIVQFSDDARTEFKLNSYDNKERLLEAINRISYKGGNTKTGLAIRHVKDTIFT
VGGGIRRGIPKVVVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPS
ERHVFFVDDLDAFQKIEEKLVTFVCEAATATCPSVAMSGSTLPGFRMMEMFGLVEGLYGR
VSGVSMEPGTFNSFPCFRLHNNSLLAQPTKFIHPEGLPSDYTITMLFRLLPETPKEPFAL
WEILNKDNEPLVGVILDNGGKTLTFFNHDYKGQFQTVTFEGPEIKKLFYGSFHKLHLAIS
KTNAKAVIDCKLVGEKAINAAGNITTDGLEVLGRMVRSRGKKDNSAPFQLQSFDIVCSTS
WASRDKCCELPGLRKEEDCPAMPRACTCTQDSKGPPGPTGPPGGPGIRGGRGDRGEPGAV
GPIGPVGDAGTPGLQGPPGPQGPSGRTIMGPPGGPGERGEKGAAGAPGIQGIPGSPGSPG
REGQTGTRGLPGKDGPQGRTGPPGTMGTPGAPGSPGSSGPQGSLGDQGPPGSAGNKGEKG
ERGDLQSQASVQAIARQVCEQLIQSHMARYSSILNHIPSAPVSVRTIPGPPGEPGRQGGQ
GPQGEQGPAGRPGFPGSNGENGQPGARGLSGEKGDKGSPGVGVQGPRGPVGPPGPTGQGR
TGSQGPSGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCVGYNVGEGGNGGDPSDHRNVP
LVQLPPNVYQNYDEAGEEDPYRYDAGGYPSEYYQPNYPAPRPVEPEDPALTQGDEVLRSP
GIHRSSRSLAEEEEEEEKKKEKEGPEERKMVGPMRESRLRRALRRSGTHD
NT seq
5733 nt
NT seq
+upstream
nt +downstream
nt
atgccggctacaggactgaagacgtgggtatggaatcctctactctgtctggctcttatc
tctctctcacctgcaccagctccagctcagggtcaagttgccactccacgaagacttcgt
ttcaaggtcctgagcgcaacccagctgcatgtgtcatggaaagagccgaaaggagacttt
gaaagctacagatttatttatagcacactatcagatgcagaggtgactgaactagaggtg
acaaagaaggaagctaaagtgatcatagactttgacgccagacagttatacacagtcaag
gtcactgctgtgaaaggtgctcaggagagcaagccacttctaggaacatttgaggcccaa
ctttcagagcctgacgttaagaacgtacagccccagaatgtacgccccaaaaaccagaaa
gacaccagtgtcacagaggagaacaatgagatatctgaagagcagttcatgtgtaagacc
ccggccatagcggatattgtgatcctggtggacggatcatggagtatcggacggataaac
ttccgtctggtccgcatgttcctggagaatctggttagcgccttccatgtggagtttgac
aagacacggataggtctggctcagtatagtggtgatcccaggattgagtggcacctgaac
actttcaccaccaaagaagcagtcatcgacgctgtgaagaaccttccttacaaaggaggg
aacacactgacgggtcttgcattgacgtacatccttgagaacagttacaaacccgagtct
ggatccagggccggcgttcccaaaattggaatcctgatcacagatgggaagtctcaagac
gatgtccaacccccggcgcggagtctgagagaggcgggaatagagctgtttgccattggt
gtgaagaacgccgatgagaaagagctgaaggccattggctctcctccagaggagacgcac
gtctacaacgtggctgacttcagcgtcatgagctccatcgtggagggtctgaccaggacc
gtctgcgaccgggtcgaacagcttgacaaggccatcaaaggcgacacaggcccagaagtc
accatggccgctcccagagacctggtgacctcggaagtgacggccaggagtttccgggtg
tcgtggacccacgcccctggcacggtggagaagtaccgggtggtgttctaccctgccagc
ggcggccagcccgaggagaaggtggtgcagggcacagtggacacggtggtgctcaactac
ctcctctccctgactgagtaccaggtggccgtgttcgccatctacgccagctcagctagc
gaggccctccgaggcagcactaccacattggccctacccatggtgaacaacctggagctg
tttgacatcacccacaatagcatgagagcccgctggagggtcgcagagggggcttctggc
tacatgatcctctatgctccactgaccgagggagacgccgccgatgagaaggaggtgaaa
gtggctgagactgtgaacgaagtggaactggagaacctgactccagacacagagtacaca
gtgaccgtgtacgccatgtacggagaggaggccagtgaccctatgaccagtcaggagacc
acgctacccctgaccccggcgcggaacctgcgcttctccgacgtcgaccacagctcggcc
aggctcacctgggaggcgacgtccaagaaggccaacggctatcgcatcatgtacgtcaag
acaaacggagtgcagaccaatgagatggatgtgggccgcatcaccaccctgttgctaagg
aacctgacatcattgacagagtacacggtggccatctttgctatctatgacgagggccag
gcagagccccttactgacagcttcaccactaatacagtcccagagcctctgaacctaaag
accagtgaagtctccacagagagcttcagggtctcctgggaacactcagcccaagacgtg
gtcctctacagactcacctggaccccaaccagaggaggagacactaaagagatgctagtg
aatggtaacaggaacagccacctgctgactggactgaggcccatcactgagtacgaagtc
tctctgattgctgtctttagaaacgaggaggaaagcgacgccgtgaccctcacagagtca
acagtggcaagaacaactactaccacaaaagctactacaaccacaactaccacacgagct
accaccacagcagttgtgcatctgggtgcgaggaacctcctgcttagtgatcacaccacc
tacagcatggaggtgtcctgggagctgcaggaccgcaatgtgcgtcagtaccgcgtcgcc
tatgtcaccgccaggggcgatcgtgccgaggagacgaaaatggtccccggtggtcagaac
agtctgctgctgcagccactgctgtctgacacggagtacaaggtgacggtcaccccagtc
tacactgacggagatggccccggtgtcagccgcatgggacgcaccttgccactgtctgct
cctaggaacctgagagtgtcggaggaatggtacaaccgcttccgtatcacctgggacact
cccccatccccaactatgggctacagggtcgtctacaaacccatctctgctccgggacct
gctctggagacctttgtgggcgaggacgtgaacaccatgctgatcctgaacctgatgagc
ggtacagagtacggcgtcagggtcatcgcctcctacaccaccggctccagcgaggccctc
actggcaaggccaggacactatacctgggagtgaccaatctgaacacctaccaggtgagg
atgaacagcatgtgtgcccagtggagttcccaccgccacgccactctgtaccgtgtggtc
atcgagtcgctgctcaatggacataaacaggaggcaaggctgggaggaggagccacccgg
cactgcttcaatgacctgatggctaacacgcagtacaaaatcagtgtgtacgcccaactc
caggacacagaggggcctgcagtcaccaccacagagagaaccttccctgttcccacccca
gcacccaccaggccgcccactaccacccctcctcccaccataccctcaaccaaggaagtt
tgcaaggcagccaaggcagacctggcgttcctagtggatggctcctggagcatcggggat
gaaagcttcctgaaaatcatccgcttcctgtacagcaccacaggagcccttgacaccatt
ggaccagatggcactcaggtggccattgtccagtttagtgacgatgctagaaccgagttc
aaactcaactcctacgacaacaaggagaggctactagaggccattaaccgcatctcctac
aagggagggaacaccaagacagggctagccatccggcatgtgaaagacaccatcttcacg
gtggggggagggatccggaggggcatccccaaagtagtggtggtgttgactgacgggcgc
tctcaggacgatgtcaacaaggtctccaaagagatgcagatggaagggtacattgtcttt
gccattggttttgcggatgcggactacggggagctggtgagcatcgccagcaagcccagc
gagagacacgttttctttgtggacgatttagatgccttccagaaaattgaggaaaagctg
gtcacctttgtttgtgaggctgccactgccacttgtccttcggtggcgatgagtggcagt
accttgccaggtttcaggatgatggagatgtttggcctggtggagggtctgtatggacgt
gtatcaggagtgtccatggagcctggcaccttcaacagcttcccctgctttcggctgcac
aacaactccctcctcgcccagcccaccaagtttatccaccctgagggcttgccctccgat
tacaccatcaccatgctgttccgcctgctgcctgaaacccccaaagagccctttgcattg
tgggagatccttaacaaggacaacgagcccctggtgggcgtcatcctggacaacggtggc
aagaccctcaccttcttcaaccacgactacaaaggacagtttcagactgtgaccttcgag
ggacctgaaatcaagaagctcttctacggcagtttccacaagctgcacctggctattagc
aagaccaacgccaaggctgtcatcgactgtaagctggttggggagaaggccatcaacgcg
gcgggcaacatcaccacagatggcctggaggtgctgggacgaatggtgcgctcccggggg
aagaaggacaactctgcaccgtttcaactgcagtcgtttgacattgtctgcagcacgtcc
tgggccagccgagacaagtgctgtgagcttcctggtctgaggaaggaggaggactgtcct
gccatgccccgggcctgcacctgcacacaggacagcaaaggcccccccggccccactgga
ccccctggaggtcctgggatcagaggagggagaggggaccgtggagaaccaggagctgtg
gggccgataggtccagttggggacgctggcactcctgggctgcaggggcctcctggcccc
cagggccccagcggccgcaccatcatgggccccccgggtggtccaggagagagaggcgag
aagggtgcagctggcgctccaggaatacagggcattcctgggtctcctgggtcaccaggt
agagagggacaaacaggaacaaggggactgcctggtaaagatggaccccaggggcgaaca
ggtcctccagggactatgggcactccaggagctcccggctcaccagggtcaagtggacct
caagggtcactgggagaccaaggacctcctggttccgctggaaacaaaggagagaaggga
gaaagaggtgacctgcaatcccaggcatcggtccaagcaatcgcccggcaggtctgtgag
cagctgatacagagtcacatggctcgctacagttccatcctcaaccacatccccagtgca
cccgtttcggtccgcaccattcctggacccccaggagagcccggtcggcagggcggccaa
ggaccacagggagagcaggggcctgcgggcagaccagggttccctgggtccaacggagag
aatggacaaccaggagccagaggtttgtcaggagagaagggtgacaagggaagcccaggt
gtaggagtccagggtcccagaggccccgtaggacccccaggaccaacgggtcaggggcgg
acaggtagccagggtccgtctggtcggccggggaaccctggaactcctgggcggccgggt
atccctggaccagtggggtcggctggacctcctggatactgtgaccagaactcttgcgtg
ggctacaacgtaggagagggtggcaacggtggtgacccatctgaccaccgcaatgttccc
ttagtccaattgccccccaacgtctaccagaactatgacgaggcgggggaggaggacccc
tataggtacgacgcggggggctacccctccgagtactatcagcccaactacccggcgccc
cgaccagtcgagcctgaggacccagccctgacccagggcgacgaggtgctgaggtccccc
gggatccaccgctcctccaggagcctggctgaagaggaggaggaggaggagaagaagaaa
gagaaagaggggccggaggagaggaaaatggttggtcccatgagagagagcaggctaagg
agagccttgaggaggtcggggacacacgactga
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