KEGG   Oncorhynchus mykiss (rainbow trout): 110496559
Entry
110496559         CDS       T07259                                 
Name
(RefSeq) collagen alpha-2(IX) chain
  KO
K08131  collagen type IX alpha
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy04510  Focal adhesion
omy04512  ECM-receptor interaction
omy04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:omy00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    110496559
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    110496559
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    110496559
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:omy00535]
    110496559
Proteoglycans [BR:omy00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   110496559
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 110496559
NCBI-ProteinID: XP_036809209
UniProt: A0A8C7V6B7
LinkDB
Position
18:complement(56704852..56726308)
AA seq 691 aa
MTGLSAVLKSWVALQTLCLALAQVSGPPGPQGNPGLPGPSGTPGSDGIDGEKGPPGPPGP
TGLKGEPGEPGPGGAPGENGIDGLIGAKGDRGPVGNPGPKGQPGPGGEPGPTGPGLPGLA
GAPGPIGLPGKIGQTGSQGILGAPGPPGIPGPPGKPGPPGKFLGGEEGSADFQCPINCPA
GPKGPQGLQGVKGHKGRAGVLGEPGSIGKLGTKGEVGVSGEQGIPGPPGPMGLRGYPGMM
GPKGEVGPRGYKGINGPVGQPGPPGEEGPQGPPGEAGKKGDLGGRGIKGPHGAVGKKGEN
GLPGIDGKDGTPGIPGIKGAPGQAGRPGGPGHQGTAGLPGSPGTKGGPGGKGEPGPRGHV
GMSGAPGPQGEPGLPGEAGMEGVPGPKGDRGQRGAVGPQGVLGKAGNKGMRGPMGVPGAQ
GISGTKGDKGFQGKVGAKGDFGDPGVEGLAGEKGETGLGGEPGPKGQQGVRGELGFNGPT
GDSGKPGDQGPGGLPGPRGLNGERGLPGMPGIVGAAGRDASDQHIIEVVLKMLQERLAAV
AVSAKRAVLGGAGVMGPPGPPGPPGAPGGQGPHGLTGARGIPGMFGASGQIGNTGLKGKR
GAKGDRGNSGKPHPGQPGPPGIPGPPGIDGVARNGKPGERGPQGSAGEAGRPGKAGPTGL
PGFCEAAACLAASAYTSPRLQDSTRVKGPGV
NT seq 2076 nt   +upstreamnt  +downstreamnt
atgactggactctcggctgtgttgaagagctgggtcgccctgcagactctgtgcctggct
ctggcccaagtgagcggtcctccaggacctcagggcaatcccggcctgcctgggccctct
ggcacccccgggtccgacggcattgatggggagaaaggacctcctggtcctcctggccca
acaggcttgaagggggagccaggtgaacctggtccaggtggagctccaggagagaatggc
attgacggtttgattggagcaaagggagatcggggtcctgtcgggaaccctggacctaag
ggccagcctggacctggtggtgaacctggacccactggacccggactgcctgggctcgct
ggagccccgggcccaattggcctccccggtaaaattggacagactggatctcagggcata
ttgggagcacctggacctccaggaattccaggacccccaggaaaaccaggacctccgggg
aagttcttgggaggagaggagggcagcgcagacttccagtgtccaatcaactgcccagca
gggcctaagggtccccagggactgcagggggtcaagggacacaaaggtcgtgctggtgtg
ctgggagagcctggtagcattgggaaactgggtacgaagggagaggtcggcgtctctggg
gaacagggaatcccaggacccccgggtcctatgggattgaggggttaccctggaatgatg
ggccccaagggagaggtgggacctcgtggttacaagggcatcaacggaccagttggccaa
cctggacccccaggtgaggagggaccccagggaccacctggagaggcagggaagaaagga
gatttgggtggccgaggtatcaagggcccacatggagccgttggcaagaagggagagaac
ggtctgcctggtattgatggaaaggacggcactcctggcatccctggaatcaagggtgcc
ccagggcaggctgggaggcctggtggtcccggtcaccagggaacagcaggtttgcctggc
agccccggaaccaagggtggacctggaggcaagggagagcctggtcccagaggccatgtt
ggaatgtctggtgccccaggacctcagggtgagcctggtcttcccggtgaagctggtatg
gagggtgttcctggtcctaagggtgacagaggccagaggggagctgtagggccacagggt
gttctcggcaaggcaggcaacaagggtatgagaggacccatgggtgttccaggggctcaa
ggcatctcaggaactaagggagataagggattccaaggaaaagttggggcgaagggtgac
tttggggatcctggtgtagaaggcttggctggggagaaaggagagacgggtttgggtggg
gagcctggacccaaaggacagcaaggagtgaggggagagctagggttcaacggccccaca
ggagactcaggtaaaccaggagaccagggaccaggaggactgcccgggcctcgtggcctc
aacggagagagaggactgccaggcatgccaggaatcgtgggggcagctggacgggatgca
tctgaccagcacatcattgaggtggttctgaagatgctgcaagagcgtctggcggctgta
gcggtgagcgctaagcgtgccgtactgggtggagccggtgtcatgggtccccctggtcct
cctggacccccaggagctccaggtggtcagggcccacacggcctcaccggcgcccgcggc
atccctggcatgtttggagcctccggccagattggcaacaccggactgaaaggaaagaga
ggagcaaagggagacagaggaaattctggcaaaccacatcctggtcagccaggaccccct
ggaataccaggtcctcctggtattgacggcgtggctcgaaacggtaagcctggcgagcga
ggcccccagggctcggcaggagaggctggtcgtcccggtaaggcgggccccactggtctt
ccagggttctgtgaggctgcagcctgcctagctgcctcggcctacacctcccccagacta
caggactccaccagggtcaagggccccggagtctaa

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