Oncorhynchus mykiss (rainbow trout): 110496811
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Entry
110496811 CDS
T07259
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110496811 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110496811 (cnot3b)
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110496811 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110496811 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
110496811
NCBI-ProteinID:
XP_036808606
Ensembl:
ENSOMYG00000044423
UniProt:
A0A8C7UI99
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All DBs
Position
18:38697121..38713314
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AA seq
933 aa
AA seq
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MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSV
SPHPSLVSLAGSLVATSPPGQSLLDDDLFHQISSGTPTSTTSSSPIPATYTTENSEDDKR
RGRSTDSEISQSPVKNGNPSSSLSSSSSSSSSSSSSASGASSGAASSSLASMVTIAGGGQ
ANAGGNNNSLLGNMGGLLSNSGSYSDATQQQLQQHHQTQQARNSILSSNASSSPSNNILL
PSPSASSPAISSTALTPNTQPQAPSRPSPGSTLGLGLGLGLGKGGMSGSPAVSQMSGLGL
SGMPASLNTMAGLLAGSTSAPYAMAAAGSGTIGSPLAGKISSLSTSSTNSSAVGPVSGLS
DRSTGLLGSVPGAVGVSGGILGLGSGQSTVQGPPLVSPSPIGGGLAPGSSLGAIGSIGGN
SGSGAPSNSLGIGGGSAAIARPPSGQKQNGSTSYSAVVADSTPDSALNIASQLQSSQPSS
LISTTNQLKDSGPSLLGSMTLPTSTPSPSYIESKPSGSSMLNGPLSYTQASESMKPQEPL
STVKSMAEQAALGSAMEGELPPLHLTTDIFPSTTAPPGPPSAPQQPSLSEVSIPPSLGVC
PLGPVPLSKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHSDSV
EFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFE
QGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagttacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaatgctaaccag
aaggagaagtatgaagccgacctcaagaaagagattaaaaaactacagcgtcttcgagac
caaatcaagacgtgggtggcctccaacgagatcaaagacaaaaggcagctagtggagaat
cgcaaactcattgagacgcaaatggagcggttcaagatcgtggaacgagagaccaagaca
aaggcttactctaaggaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaggaggaggtcggcaattggctaacgaatacgatagacactctgaacatgcaggtggat
cagtttgagagcgaagtggagtccctctcagtccagactcgaaagaagaagggagacaaa
gagaaacaggaccgcatcgaagagctgaagcgcttcatcgagaagcaccggtaccacatc
cggatgctggagaccatcctgcggatgctggacaatgacaccttgccggtggactccatc
cgcaagatcaaggacgacgtggagtactacatggactcgtcgcaggaccccgacttcgag
gagaacgagttcctctacgacgacctggatctggaggagctccctacctctccctctgtc
tccccccatccatctcttgtgtctctagccgggtcgctggtggccacgtccccgccgggc
caatcgctcctggacgacgatctcttccatcagatctccagcggcacgcctacctccacc
acttcctcctcgcccattcccgccacgtacactacggagaactctgaagatgacaagaga
aggggacgttcgacagacagtgaaatcagtcagtcacctgtcaagaatggcaacccctct
tcgtcgttgtcttcatcgtcctcatcctcctcgtcctcttcatcatctgcctctggcgcc
tcctcgggagcagcctcttcctcgctggcctctatggtgaccatcgccggaggcggccag
gccaacgctgggggcaacaacaacagccttctgggcaacatggggggtctcctctccaac
tctggcagctacagcgacgctacccagcagcaacttcagcagcatcaccaaacgcagcag
gccagaaactcaatcctctcctccaacgcctcctccagcccctcgaacaacatccttctc
cccagcccctccgcctcctcgcccgccatctctagcacagccctcacacccaacacccag
ccgcaggctccgtcaaggccctctccgggctctaccttggggctcgggttgggcttgggc
cttggtaaaggcggcatgagtgggtcaccggctgtcagccagatgtcgggccttggcctt
tcagggatgccggcgtccttaaacaccatggccggactcctggcgggctccacttcggcc
ccctacgccatggcagcagcaggctccgggaccataggaagcccccttgcagggaaaatc
agcagcctgagcactagcagcactaactccagcgcagtgggaccggtgagcggactcagc
gacaggtccacgggccttttgggctctgtgcccggtgcagttggtgtcagtggtgggatc
ctaggccttggctcaggacagtcgacagtccagggccctccactggtgtcccccagtccc
ataggaggaggcctggcccctggaagcagcctgggagctataggaagcattggagggaac
tctggatcaggagcgccaagtaacagcttgggcatcggaggaggaagcgcggcgattgca
aggccacccagtggacagaagcagaatggtagcactagttacagtgctgtagtagcagac
agcacaccagattctgccctcaacattgccagccaattacaaagcagccaaccctcgtct
ttgatctccaccaccaatcagcttaaagacagtggccccagccttttagggtccatgacc
ctacccaccagcactccctcgccatcctacattgagagtaaaccttcaggcagcagtatg
ctcaacgggccgctctcctacacacaggcctctgaaagcatgaagccccaggagcctctg
agcactgtgaagtccatggccgaacaagcggcactgggctcagcaatggagggagagttg
ccccctctgcacctcaccacagacattttccccagcactacagcgcctccagggcctccc
tcggccccccagcagccctcgctctcggaggtcagcatccccccatcgctgggtgtgtgc
ccgctggggcccgtacccctgtccaaagaccagctgtaccagcaggccatgcaggagtcg
gcctggacgcacatgccccacccctccgactcagagcggatcaggcagtacctgatgagg
aacccgtgtcccaccctgcctttccaccaccaggtgccacctccccactccgactctgtg
gagttctaccagagactgtccacggagacactgttcttcatattctactacctagagggc
accaaggcccagtatctggcagccaaggccttgaagaagcagtcgtggcggttccacacc
aagtacatgatgtggtttcagaggcacgaggagcccaagaccatcacagatgagtttgag
caggggacgtacatttacttcgactacgagaagtggggacaacggaagaaggaaggattc
acgtttgagtacaggtaccttgaagaccgagacctccagtga
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